JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLRA3_chr4_174631920_174834247	0/0	t0060	7303	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0061	7302	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/1	t0062	7300	1	0	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0063	7300	1	0	0	0	1	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0064	7300	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0065	7300	1	0	0	0	0	1	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0066	7303	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0067	7298	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0068	7329	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0069	7343	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0070	7341	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0071	7336	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0072	7339	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0073	7344	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0074	7347	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0075	7345	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0076	7347	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0077	7341	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0078	7341	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0079	7340	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0080	7333	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0081	7328	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0082	7337	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0083	7340	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0084	7332	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0085	7346	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0086	7344	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0087	7336	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0088	7344	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0089	7345	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0090	7343	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0091	7337	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0092	7343	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0093	7335	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0094	7340	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0095	7341	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0096	7335	1	0	0	0	0	1	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0097	7335	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0098	7332	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0099	7337	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0100	7339	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0101	7335	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0102	7335	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRB_chr4_157071150_157177090	1/1	t0001	1540	98	14	21	48	2	11	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0002	1540	66	8	7	41	1	9	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0003	1540	45	29	10	3	0	3	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0004	1540	24	0	0	24	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0005	1540	15	7	0	7	0	1	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0006	1540	14	6	1	4	0	3	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0007	1540	7	5	2	0	0	0	copy fasta	GLRB	chr4	157071150	157177090