JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLRB_chr4_157071150_157177090	0/0	t0008	1540	6	6	0	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0009	1540	5	0	0	4	0	1	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0010	1540	3	3	0	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0011	1540	3	0	0	3	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0012	1540	3	1	1	0	1	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0013	1540	3	3	0	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0014	1540	2	1	1	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0015	1540	2	0	2	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0016	1540	1	1	0	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0017	1540	1	1	0	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0018	1540	1	0	0	1	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0019	1540	1	1	0	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0020	1540	1	1	0	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0021	1540	1	1	0	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0022	1540	1	1	0	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0023	1540	1	0	0	1	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0024	1540	1	1	0	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	t0025	1540	1	0	1	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRX2_chr1_193091470_193110414	1/1	t0001	188	383	85	56	178	18	44	copy fasta	GLRX2	chr1	193091470	193110414
GLRX2_chr1_193091470_193110414	0/0	t0002	188	2	2	0	0	0	0	copy fasta	GLRX2	chr1	193091470	193110414
GLRX2_chr1_193091470_193110414	0/0	t0003	188	1	1	0	0	0	0	copy fasta	GLRX2	chr1	193091470	193110414
GLRX3_chr10_130131391_130184672	1/1	t0001	311	423	93	78	194	16	40	copy fasta	GLRX3	chr10	130131391	130184672
GLRX3_chr10_130131391_130184672	0/0	t0002	311	1	1	0	0	0	0	copy fasta	GLRX3	chr10	130131391	130184672
GLRX5_chr14_95530050_95549714	0/1	t0001	630	232	60	45	93	9	24	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	t0002	630	84	25	28	20	4	7	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	t0003	630	76	3	2	55	1	15	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	1/0	t0004	630	55	0	4	46	2	2	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	t0005	630	4	4	0	0	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	t0006	630	2	2	0	0	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	t0007	630	1	1	0	0	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	t0008	630	1	1	0	0	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	t0009	630	1	0	0	1	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	t0010	630	1	0	1	0	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	t0011	630	1	1	0	0	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	t0012	630	1	0	0	1	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	t0013	630	1	1	0	0	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX_chr5_95808849_95827726	0/1	t0001	612	190	37	30	76	10	36	copy fasta	GLRX	chr5	95808849	95827726
GLRX_chr5_95808849_95827726	1/0	t0002	612	130	12	23	80	6	8	copy fasta	GLRX	chr5	95808849	95827726
GLRX_chr5_95808849_95827726	0/0	t0003	612	56	34	17	5	0	0	copy fasta	GLRX	chr5	95808849	95827726
GLRX_chr5_95808849_95827726	0/0	t0004	612	17	13	2	0	0	2	copy fasta	GLRX	chr5	95808849	95827726
GLRX_chr5_95808849_95827726	0/0	t0005	613	14	0	1	13	0	0	copy fasta	GLRX	chr5	95808849	95827726
GLRX_chr5_95808849_95827726	0/0	t0006	608	9	0	7	0	2	0	copy fasta	GLRX	chr5	95808849	95827726
GLRX_chr5_95808849_95827726	0/0	t0007	612	1	0	0	1	0	0	copy fasta	GLRX	chr5	95808849	95827726
GLRX_chr5_95808849_95827726	0/0	t0008	612	1	1	0	0	0	0	copy fasta	GLRX	chr5	95808849	95827726
GLRX_chr5_95808849_95827726	0/0	t0009	612	1	0	0	1	0	0	copy fasta	GLRX	chr5	95808849	95827726
GLRX_chr5_95808849_95827726	0/0	t0010	612	1	1	0	0	0	0	copy fasta	GLRX	chr5	95808849	95827726
GLS2_chr12_56465952_56493161	1/1	t0001	579	310	81	52	135	12	28	copy fasta	GLS2	chr12	56465952	56493161
GLS2_chr12_56465952_56493161	0/0	t0002	579	46	1	18	19	4	4	copy fasta	GLS2	chr12	56465952	56493161
GLS2_chr12_56465952_56493161	0/0	t0003	579	5	5	0	0	0	0	copy fasta	GLS2	chr12	56465952	56493161
GLS2_chr12_56465952_56493161	0/0	t0004	579	1	1	0	0	0	0	copy fasta	GLS2	chr12	56465952	56493161