JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLS_chr2_190875821_190970552	0/0	t0001	2804	81	7	10	54	4	6	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/1	t0002	2825	38	1	3	26	2	5	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0003	2825	31	5	10	15	0	1	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0004	2831	27	1	5	15	4	2	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0005	2828	21	1	9	6	1	4	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0006	2828	19	1	6	10	0	2	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0007	2809	12	0	1	11	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0008	2812	11	10	1	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0009	2828	10	5	1	3	1	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0010	2834	9	1	4	2	0	2	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0011	2813	7	1	4	0	1	1	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0012	2825	7	5	0	2	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0013	2825	6	0	0	2	0	4	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0014	2807	4	0	4	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0015	2822	4	0	0	4	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0016	2822	4	4	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0017	2820	4	4	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0018	2828	4	4	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	1/0	t0019	2831	4	1	1	0	0	1	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0020	2831	4	0	0	4	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0021	2837	4	3	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0022	2837	4	1	1	1	1	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0023	2804	3	0	0	3	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0024	2807	3	3	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0025	2819	3	3	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0026	2804	2	0	2	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0027	2813	2	1	0	0	0	1	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0028	2812	2	2	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0029	2825	2	2	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0030	2828	2	0	0	2	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0031	2834	2	0	0	2	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0032	2849	2	1	0	0	1	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0033	2804	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0034	2811	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0035	2798	1	0	1	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0036	2798	1	0	1	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0037	2804	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0038	2804	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0039	2830	1	0	1	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0040	2807	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0041	2810	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0042	2809	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0043	2814	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0044	2816	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0045	2815	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0046	2816	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0047	2816	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0048	2820	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0049	2821	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0050	2818	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552