JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLS_chr2_190875821_190970552	0/0	t0051	2822	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0052	2823	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0053	2826	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0054	2822	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0055	2828	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0056	2827	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0057	2828	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0058	2829	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0059	2827	1	0	0	0	0	1	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0060	2828	1	0	0	0	0	1	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0061	2828	1	0	0	0	0	1	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0062	2828	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0063	2832	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0064	2831	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0065	2831	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0066	2829	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0067	2837	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0068	2843	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0069	2845	1	0	1	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0070	2849	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0071	2852	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0072	2897	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0073	2825	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	t0074	2828	1	0	0	0	1	0	copy fasta	GLS	chr2	190875821	190970552
GLT1D1_chr12_128848478_128989968	1/0	t0001	1983	173	38	37	71	6	20	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0002	1984	49	9	9	21	3	7	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/1	t0003	1983	27	1	9	6	3	7	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0004	1983	18	15	3	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0005	1984	18	6	0	11	1	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0006	1984	10	0	0	9	0	1	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0007	1983	5	4	1	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0008	1983	4	4	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0009	1983	2	0	0	1	0	1	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0010	1984	2	0	0	0	1	1	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0011	1983	2	2	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0012	1983	1	1	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0013	1983	1	0	0	1	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0014	1984	1	0	0	1	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0015	1983	1	0	0	0	0	1	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0016	1983	1	0	1	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0017	1983	1	1	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0018	1983	1	0	0	1	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0019	1983	1	1	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0020	1983	1	1	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	t0021	1983	1	1	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT6D1_chr9_135618648_135644540	0/1	t0001	704	259	49	51	124	9	25	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	1/0	t0002	704	65	20	6	25	3	10	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	t0003	704	56	17	13	13	2	11	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	t0004	701	46	6	11	29	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	t0005	704	3	0	0	3	0	0	copy fasta	GLT6D1	chr9	135618648	135644540