JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLT6D1_chr9_135618648_135644540	0/0	t0006	704	2	0	0	2	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	t0007	704	2	0	0	2	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	t0008	704	1	0	0	1	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	t0009	701	1	0	0	1	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	t0010	704	1	0	1	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT8D1_chr3_52689486_52710791	1/1	t0001	741	255	87	45	77	12	32	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	t0002	741	128	9	26	83	4	6	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	t0003	741	3	0	0	3	0	0	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	t0004	741	2	0	2	0	0	0	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	t0005	741	2	1	1	0	0	0	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	t0006	741	1	0	0	0	0	1	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	t0007	741	1	1	0	0	0	0	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	t0008	741	1	0	0	0	0	1	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	t0009	741	1	0	0	1	0	0	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D2_chr12_103983987_104055187	1/1	t0001	878	288	93	55	91	14	33	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	t0002	878	75	0	9	60	1	5	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	t0003	878	46	1	4	31	0	10	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	t0004	878	2	0	0	2	0	0	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	t0005	878	2	1	0	0	1	0	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	t0006	878	1	1	0	0	0	0	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	t0007	878	1	0	0	0	0	1	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	t0008	878	1	0	0	0	0	1	copy fasta	GLT8D2	chr12	103983987	104055187
GLTPD2_chr17_4783964_4795589	1/1	t0001	342	457	94	84	217	18	42	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	t0002	342	2	0	0	0	0	2	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	t0003	342	1	0	0	1	0	0	copy fasta	GLTPD2	chr17	4783964	4795589
GLTP_chr12_109845945_109885541	1/0	t0001	1778	85	1	21	52	4	6	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0002	1782	52	8	7	17	5	15	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/1	t0003	1782	45	12	21	2	5	4	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0004	1776	28	8	0	18	0	2	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0005	1777	13	12	1	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0006	1779	13	7	0	6	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0007	1781	13	7	5	0	1	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0008	1775	12	8	4	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0009	1783	8	3	1	2	0	2	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0010	1782	6	6	0	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0011	1781	5	3	0	1	1	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0012	1777	4	4	0	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0013	1778	4	0	0	4	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0014	1778	3	0	0	3	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0015	1783	3	0	0	3	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0016	1775	2	2	0	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0017	1775	2	0	2	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0018	1778	2	0	0	2	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0019	1777	2	2	0	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0020	1782	2	0	0	0	0	2	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0021	1783	2	0	1	1	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0022	1775	1	1	0	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0023	1775	1	1	0	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0024	1776	1	0	0	1	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0025	1776	1	0	0	1	0	0	copy fasta	GLTP	chr12	109845945	109885541