JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLTP_chr12_109845945_109885541	0/0	t0026	1776	1	1	0	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0027	1778	1	0	1	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0028	1778	1	1	0	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0029	1778	1	0	0	1	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0030	1778	1	0	0	1	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0031	1777	1	0	1	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0032	1781	1	0	1	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0033	1781	1	1	0	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0034	1782	1	1	0	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0035	1775	1	0	0	1	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0036	1777	1	0	0	0	0	1	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	t0037	1781	1	1	0	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLUD1_chr10_87045202_87099843	1/1	t0001	1624	292	67	65	118	6	34	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	t0002	1625	28	9	12	7	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	t0003	1625	6	4	0	0	2	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	t0004	1624	2	2	0	0	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	t0005	1624	1	0	1	0	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	t0006	1624	1	1	0	0	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	t0007	1624	1	1	0	0	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	t0008	1624	1	1	0	0	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	t0009	1624	1	0	0	1	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	t0010	1625	1	1	0	0	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD2_chrX_121042610_121055094	1/1	t0001	809	286	61	50	135	11	27	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	t0002	809	14	5	3	6	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	t0003	809	9	8	1	0	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	t0004	809	2	2	0	0	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	t0005	809	1	1	0	0	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	t0006	806	1	0	0	1	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	t0007	809	1	1	0	0	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUL_chr1_182373098_182396790	0/0	t0001	6439	97	1	21	63	2	10	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0002	6440	83	10	6	51	3	13	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/1	t0003	6433	52	2	7	35	1	6	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0004	6440	24	1	13	7	0	3	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0005	6435	17	10	2	0	0	5	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0006	6440	14	13	1	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0007	6439	13	5	4	0	2	2	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0008	6440	11	10	1	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0009	6439	6	6	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0010	6440	5	5	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0011	6440	5	0	5	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0012	6438	4	4	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0013	6440	3	0	0	3	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0014	6440	3	0	0	0	2	1	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0015	6439	3	3	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0016	6435	3	0	3	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0017	6439	3	0	0	3	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0018	6439	3	0	1	0	2	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0019	6440	2	1	1	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0020	6440	2	0	2	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0021	6439	2	2	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790