JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLUL_chr1_182373098_182396790	0/0	t0022	6440	2	0	0	2	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0023	6439	2	0	1	0	1	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0024	6439	2	2	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0025	6434	2	0	0	2	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0026	6439	2	2	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0027	6445	2	1	1	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0028	6440	1	0	0	0	0	1	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0029	6440	1	0	1	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0030	6439	1	0	0	1	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0031	6440	1	0	0	1	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0032	6439	1	0	0	1	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0033	6439	1	0	0	1	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0034	6439	1	0	0	1	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0035	6439	1	0	0	1	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0036	6440	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0037	6440	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0038	6439	1	0	0	1	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0039	6439	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0040	6440	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0041	6440	1	0	0	1	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0042	6439	1	0	0	1	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0043	6779	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0044	6439	1	0	0	1	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0045	6439	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0046	6440	1	0	1	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0047	6440	1	0	0	0	0	1	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0048	6440	1	0	0	0	1	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0049	6439	1	0	0	0	0	1	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0050	6439	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0051	6439	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0052	6433	1	0	0	1	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0053	6433	1	0	1	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0054	6433	1	0	0	0	0	1	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	1/0	t0055	6433	1	0	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0056	6433	1	0	0	1	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0057	6439	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0058	6444	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0059	6440	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	t0060	6439	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLYATL1_chr11_58934488_58961406	1/1	t0001	709	161	50	27	66	1	15	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	t0002	709	115	23	19	61	2	10	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	t0003	709	105	14	20	53	5	13	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	t0004	709	28	0	8	13	2	5	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	t0005	709	6	0	0	5	0	1	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	t0006	709	4	4	0	0	0	0	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	t0007	709	3	3	0	0	0	0	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	t0008	709	1	0	1	0	0	0	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	t0009	709	1	0	1	0	0	0	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL2_chr11_58829065_58849704	0/1	t0001	676	203	62	38	74	5	23	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	t0002	676	165	24	23	101	1	16	copy fasta	GLYATL2	chr11	58829065	58849704