Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALG9_chr11_111777195_111876581	0/0	t0006	4302	4	4	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0007	4289	3	3	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0008	4288	3	0	0	3	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0009	4302	3	2	1	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0010	4303	3	3	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0011	4302	3	3	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0012	4302	3	3	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0013	4302	2	0	0	0	1	1	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0014	4288	2	0	2	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0015	4302	2	2	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0016	4302	2	2	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0017	4289	2	0	1	0	1	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0018	4302	2	0	2	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0019	4289	2	0	1	1	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0020	4302	2	2	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0021	4302	2	0	0	2	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0022	4302	1	1	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0023	4288	1	1	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0024	4302	1	0	0	1	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0025	4302	1	0	0	1	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0026	4302	1	1	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0027	4301	1	0	0	1	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0028	4303	1	1	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0029	4302	1	1	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0030	4302	1	0	0	0	0	1	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0031	4302	1	1	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0032	4303	1	1	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALKAL1_chr8_52529037_52570430	1/1	t0001	751	387	86	72	169	14	44	copy fasta	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	t0002	748	5	5	0	0	0	0	copy fasta	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	t0003	751	1	1	0	0	0	0	copy fasta	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	t0004	751	1	1	0	0	0	0	copy fasta	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	t0005	751	1	0	0	1	0	0	copy fasta	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	t0006	751	1	1	0	0	0	0	copy fasta	ALKAL1	chr8	52529037	52570430
ALKAL2_chr2_274558_293091	1/1	t0001	726	271	75	56	85	14	39	copy fasta	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	t0002	726	142	18	20	94	2	8	copy fasta	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	t0003	726	1	0	0	0	0	1	copy fasta	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	t0004	726	1	0	0	1	0	0	copy fasta	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	t0005	726	1	1	0	0	0	0	copy fasta	ALKAL2	chr2	274558	293091
ALKBH1_chr14_77667404_77713023	0/0	t0001	1428	119	9	26	64	5	15	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	1/1	t0002	1428	96	53	5	26	2	8	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	t0003	1428	72	9	11	47	1	4	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	t0004	1428	27	5	10	7	2	3	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	t0005	1428	19	12	3	0	4	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	t0006	1428	14	0	2	10	2	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	t0007	1429	5	0	0	5	0	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	t0008	1428	2	2	0	0	0	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	t0009	1428	1	0	0	0	0	1	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	t0010	1428	1	0	1	0	0	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	t0011	1428	1	1	0	0	0	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	t0012	1428	1	1	0	0	0	0	copy fasta	ALKBH1	chr14	77667404	77713023