JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLYR1_chr16_4798203_4852288	0/1	t0003	2059	41	4	11	22	0	3	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0004	2057	29	8	8	7	3	3	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0005	2061	21	5	2	5	0	9	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0006	2063	13	1	1	5	2	4	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0007	2055	12	9	0	3	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0008	2061	11	1	3	6	0	1	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0009	2053	10	8	0	2	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0010	2063	9	3	3	0	2	1	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0011	2057	6	6	0	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0012	2055	5	3	0	2	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0013	2051	5	5	0	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0014	2053	3	3	0	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0015	2091	2	1	1	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0016	2065	2	0	0	2	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0017	2059	2	0	0	2	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0018	2059	2	2	0	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0019	2059	2	0	1	0	0	1	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0020	2047	2	0	2	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0021	2041	2	2	0	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0022	2157	1	0	0	0	0	1	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0023	2113	1	0	0	0	0	1	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0024	2103	1	0	0	0	1	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0025	2085	1	0	0	1	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0026	2079	1	0	1	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0027	2075	1	1	0	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0028	2073	1	0	0	1	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0029	2071	1	0	0	0	1	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0030	2067	1	0	0	0	1	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0031	2065	1	0	1	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0032	2061	1	0	0	1	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0033	2059	1	0	0	1	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0034	2057	1	1	0	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0035	2057	1	0	0	1	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0036	2057	1	0	1	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0037	2057	1	1	0	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0038	2057	1	0	0	0	1	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0039	2057	1	0	0	1	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0040	2055	1	0	1	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0041	2051	1	0	0	0	0	1	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0042	2047	1	0	1	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0043	2043	1	1	0	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GM2A_chr5_151248185_151275440	0/0	t0001	3023	77	5	17	37	4	14	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0002	3020	77	5	8	55	1	8	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/1	t0003	3023	39	2	1	30	1	4	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0004	3020	26	3	3	14	2	4	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0005	3023	19	0	0	17	0	2	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	1/0	t0006	3022	18	1	9	0	4	3	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0007	3023	13	10	3	0	0	0	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0008	3023	12	1	3	1	1	6	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0009	3023	11	10	1	0	0	0	copy fasta	GM2A	chr5	151248185	151275440