JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GM2A_chr5_151248185_151275440	0/0	t0060	3023	1	0	0	1	0	0	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0061	3025	1	0	1	0	0	0	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0062	3020	1	0	0	1	0	0	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0063	3023	1	1	0	0	0	0	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0064	3023	1	0	0	0	0	1	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0065	3023	1	0	0	1	0	0	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0066	3023	1	0	0	1	0	0	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0067	3022	1	0	0	1	0	0	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0068	3024	1	0	1	0	0	0	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0069	3020	1	1	0	0	0	0	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0070	3025	1	1	0	0	0	0	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	t0071	3023	1	1	0	0	0	0	copy fasta	GM2A	chr5	151248185	151275440
GMCL1_chr2_69824660_69886384	0/1	t0001	2612	96	10	6	64	3	12	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	1/0	t0002	2614	84	11	17	38	6	11	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0003	2612	80	24	12	38	2	4	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0004	2612	32	9	12	11	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0005	2614	17	15	2	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0006	2613	17	1	9	7	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0007	2612	12	3	0	2	1	6	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0008	2611	5	0	0	4	1	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0009	2613	4	0	1	2	0	1	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0010	2613	3	3	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0011	2614	3	0	0	3	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0012	2613	3	0	2	1	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0013	2614	3	0	0	3	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0014	2613	3	2	1	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0015	2612	3	0	0	3	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0016	2613	2	2	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0017	2612	2	2	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0018	2613	2	1	1	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0019	2612	2	2	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0020	2612	2	0	0	2	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0021	2612	2	0	0	2	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0022	2614	1	1	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0023	2613	1	1	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0024	2612	1	1	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0025	2611	1	1	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0026	2612	1	0	1	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0027	2614	1	0	1	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0028	2612	1	0	0	1	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0029	2611	1	0	0	1	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0030	2612	1	1	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0031	2612	1	1	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0032	2614	1	0	0	0	1	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0033	2614	1	0	1	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	t0034	2612	1	1	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL2_chr5_178179505_178192371	0/0	t0001	1287	152	27	13	99	2	11	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0002	1287	110	21	32	26	8	23	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0003	1287	80	8	12	48	3	9	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/1	t0004	1287	26	1	5	13	2	4	copy fasta	GMCL2	chr5	178179505	178192371