JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GMCL2_chr5_178179505_178192371	0/0	t0005	1287	21	16	5	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0006	1287	21	18	2	0	1	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0007	1288	10	0	5	4	0	1	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0008	1288	7	2	3	2	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	1/0	t0009	1287	5	4	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0010	1287	3	0	0	3	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0011	1287	3	0	0	3	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0012	1288	2	0	0	1	0	1	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0013	1288	2	0	2	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0014	1287	2	0	0	2	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0015	1287	2	0	2	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0016	1287	1	1	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0017	1287	1	0	1	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0018	1287	1	0	0	0	0	1	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0019	1287	1	0	0	1	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0020	1288	1	1	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	t0021	1288	1	1	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMDS_chr6_1618806_2250605	1/1	t0001	547	135	45	25	43	6	14	copy fasta	GMDS	chr6	1618806	2250605
GMDS_chr6_1618806_2250605	0/0	t0002	547	27	22	1	3	0	1	copy fasta	GMDS	chr6	1618806	2250605
GMDS_chr6_1618806_2250605	0/0	t0003	547	1	0	0	1	0	0	copy fasta	GMDS	chr6	1618806	2250605
GMDS_chr6_1618806_2250605	0/0	t0004	547	1	1	0	0	0	0	copy fasta	GMDS	chr6	1618806	2250605
GMDS_chr6_1618806_2250605	0/0	t0005	547	1	0	0	1	0	0	copy fasta	GMDS	chr6	1618806	2250605
GMDS_chr6_1618806_2250605	0/0	t0006	547	1	0	0	0	0	1	copy fasta	GMDS	chr6	1618806	2250605
GMEB1_chr1_28663784_28724353	0/0	t0001	4666	83	38	21	8	7	9	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/1	t0002	4668	80	8	15	41	6	9	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	1/0	t0003	4667	45	16	2	21	1	4	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0004	4667	10	2	4	3	0	1	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0005	4669	4	0	4	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0006	4667	4	4	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0007	4667	4	1	0	2	0	1	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0008	4666	3	0	0	0	2	1	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0009	4669	3	2	1	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0010	4666	3	0	3	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0011	4668	3	1	0	2	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0012	4666	3	0	3	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0013	4665	3	0	1	0	2	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0014	4663	3	3	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0015	4665	3	0	2	1	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0016	4670	2	1	1	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0017	4669	2	0	0	2	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0018	4664	2	2	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0019	4669	2	1	1	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0020	4669	1	0	1	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0021	4667	1	0	1	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0022	4666	1	0	1	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0023	4668	1	0	1	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0024	4668	1	0	0	1	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0025	4668	1	1	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0026	4669	1	1	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0027	4667	1	0	0	0	0	1	copy fasta	GMEB1	chr1	28663784	28724353