JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GMEB1_chr1_28663784_28724353	0/0	t0028	4667	1	0	0	0	0	1	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0029	4668	1	0	1	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0030	4666	1	1	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0031	4666	1	0	0	0	0	1	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0032	4667	1	0	0	0	0	1	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0033	4667	1	0	0	1	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0034	4654	1	1	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0035	4667	1	0	0	0	0	1	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0036	4667	1	1	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0037	4669	1	0	0	1	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0038	4668	1	1	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0039	4670	1	0	0	0	0	1	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0040	4669	1	1	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0041	4666	1	1	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0042	4666	1	1	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0043	4666	1	0	1	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0044	4666	1	1	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0045	4667	1	0	0	0	0	1	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0046	4665	1	0	0	1	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	t0047	4663	1	1	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB2_chr20_63582605_63632101	0/0	t0001	2688	123	29	36	30	8	20	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0002	2688	78	0	12	51	5	10	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0003	2688	60	22	8	24	0	6	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0004	2688	20	17	1	0	0	2	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	1/1	t0005	2688	14	1	8	0	3	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0006	2688	4	0	0	4	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0007	2688	4	3	1	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0008	2688	3	3	0	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0009	2688	2	2	0	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0010	2688	2	2	0	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0011	2688	2	2	0	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0012	2688	2	2	0	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0013	2688	2	1	1	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0014	2688	2	0	0	2	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0015	2688	1	1	0	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0016	2688	1	0	0	0	0	1	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0017	2688	1	0	1	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0018	2688	1	1	0	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0019	2688	1	1	0	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0020	2688	1	0	0	0	0	1	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0021	2688	1	0	1	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0022	2688	1	0	1	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0023	2688	1	0	0	1	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0024	2688	1	0	0	1	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0025	2688	1	1	0	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	t0026	2688	1	0	0	1	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMFB_chr14_54469485_54493980	1/0	t0001	3657	237	41	41	126	6	22	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0002	3657	45	8	6	28	0	3	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/1	t0003	3658	43	29	6	0	4	3	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0004	3658	3	3	0	0	0	0	copy fasta	GMFB	chr14	54469485	54493980