JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GMFB_chr14_54469485_54493980	0/0	t0005	3658	3	3	0	0	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0006	3657	3	0	0	0	0	3	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0007	3657	3	0	2	0	0	1	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0008	3657	2	0	0	2	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0009	3657	2	2	0	0	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0010	3657	2	0	0	0	0	2	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0011	3657	2	2	0	0	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0012	3658	1	1	0	0	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0013	3657	1	0	0	1	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0014	3658	1	1	0	0	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0015	3657	1	1	0	0	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0016	3657	1	0	0	1	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0017	3657	1	1	0	0	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0018	3657	1	0	0	1	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0019	3657	1	0	0	1	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	t0020	3657	1	0	1	0	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFG_chr19_39323359_39341043	1/1	t0001	186	374	86	72	164	12	38	copy fasta	GMFG	chr19	39323359	39341043
GMIP_chr19_19624476_19648657	0/1	t0001	616	289	53	57	134	12	32	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	1/0	t0002	616	123	41	26	35	4	16	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	t0003	616	1	0	1	0	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	t0004	616	1	1	0	0	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	t0005	616	1	1	0	0	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	t0006	616	1	0	0	1	0	0	copy fasta	GMIP	chr19	19624476	19648657
GML_chr8_142829801_142851851	0/0	t0001	251	155	17	27	89	5	17	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/1	t0002	251	132	37	25	41	7	21	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	t0003	251	102	11	13	72	0	6	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	t0004	251	27	21	2	0	0	4	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	t0005	251	2	2	0	0	0	0	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	t0006	251	1	0	1	0	0	0	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	t0007	251	1	1	0	0	0	0	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	1/0	t0008	252	1	0	0	0	0	0	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	t0009	251	1	1	0	0	0	0	copy fasta	GML	chr8	142829801	142851851
GMNC_chr3_190847737_190867694	1/1	t0001	2638	210	7	43	127	11	20	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0002	2638	124	18	14	70	3	19	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0003	2638	40	30	7	0	0	3	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0004	2638	37	2	7	24	1	3	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0005	2638	14	8	4	0	2	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0006	2638	8	0	0	8	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0007	2638	6	4	2	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0008	2637	6	6	0	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0009	2638	5	5	0	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0010	2634	5	0	0	2	0	3	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0011	2638	4	0	0	4	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0012	2638	4	4	0	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0013	2638	3	2	1	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0014	2638	3	1	2	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0015	2638	3	3	0	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0016	2638	2	0	0	2	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0017	2638	2	1	1	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0018	2638	2	2	0	0	0	0	copy fasta	GMNC	chr3	190847737	190867694