JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GMNC_chr3_190847737_190867694	0/0	t0019	2638	2	2	0	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0020	2638	2	2	0	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0021	2638	1	1	0	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0022	2638	1	1	0	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0023	2638	1	1	0	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0024	2638	1	0	1	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0025	2638	1	0	0	0	1	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	t0026	2638	1	0	0	1	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNN_chr6_24769937_24791099	1/1	t0001	634	298	38	60	152	13	33	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	t0002	634	60	22	8	21	0	9	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	t0003	634	34	17	3	13	0	1	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	t0004	634	15	11	3	0	1	0	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	t0005	634	4	4	0	0	0	0	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	t0006	634	1	0	0	0	0	1	copy fasta	GMNN	chr6	24769937	24791099
GMPPA_chr2_219493891_219511989	1/1	t0001	260	371	98	72	135	18	46	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	t0002	260	8	0	0	8	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	t0003	260	2	0	0	2	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	t0004	260	1	0	0	1	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPB_chr3_49714916_49728951	0/0	t0001	2065	152	22	33	69	10	18	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/1	t0002	2062	83	21	13	39	1	8	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	1/0	t0003	2062	50	34	10	1	3	1	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	t0004	2062	12	0	0	12	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	t0005	2065	8	0	0	7	0	1	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	t0006	2062	7	6	0	0	0	1	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	t0007	2070	2	0	2	0	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	t0008	2070	2	0	2	0	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	t0009	2065	2	2	0	0	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	t0010	2065	2	0	2	0	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	t0011	2065	2	2	0	0	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	t0012	2065	1	1	0	0	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	t0013	2065	1	1	0	0	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	t0014	2062	1	1	0	0	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	t0015	2062	1	0	0	0	0	1	copy fasta	GMPPB	chr3	49714916	49728951
GMPR2_chr14_24227929_24244242	1/1	t0001	549	411	88	68	191	14	48	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	t0002	548	8	0	0	8	0	0	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	t0003	549	1	0	0	1	0	0	copy fasta	GMPR2	chr14	24227929	24244242
GMPR_chr6_16233587_16300549	0/0	t0001	471	163	35	17	90	2	19	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	1/0	t0002	471	83	8	34	27	4	9	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	t0003	471	66	28	13	13	0	12	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/1	t0004	471	11	1	5	0	0	4	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	t0005	471	8	6	2	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	t0006	472	4	4	0	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	t0007	471	2	2	0	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	t0008	471	1	0	1	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	t0009	472	1	0	1	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	t0010	471	1	0	1	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	t0011	471	1	0	0	1	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	t0012	471	1	1	0	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	t0013	471	1	1	0	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	t0014	471	1	0	0	1	0	0	copy fasta	GMPR	chr6	16233587	16300549