JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GMPS_chr3_155865650_155949020	0/1	t0001	6552	107	29	18	48	2	9	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0002	6551	59	5	14	29	4	7	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0003	6551	37	6	11	20	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	1/0	t0004	6550	26	1	7	7	0	10	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0005	6549	23	0	1	19	0	3	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0006	6552	13	13	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0007	6554	11	3	3	0	0	5	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0008	6552	8	6	0	0	1	1	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0009	6551	7	0	4	0	2	1	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0010	6553	7	2	1	4	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0011	6551	6	0	4	0	2	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0012	6551	6	0	0	6	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0013	6540	5	4	1	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0014	6550	5	4	1	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0015	6552	3	0	2	1	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0016	6554	3	3	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0017	6556	3	0	0	3	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0018	6549	3	0	0	3	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0019	6549	3	0	0	3	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0020	6550	2	1	1	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0021	6550	2	0	0	0	2	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0022	6551	2	2	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0023	6552	2	0	2	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0024	6551	2	0	0	2	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0025	6551	2	0	0	0	0	2	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0026	6549	2	0	0	2	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0027	6552	2	2	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0028	6552	2	1	1	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0029	6552	2	0	2	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0030	6552	2	2	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0031	6549	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0032	6549	1	0	0	0	0	1	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0033	6551	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0034	6552	1	0	0	1	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0035	6551	1	0	0	1	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0036	6550	1	0	0	0	1	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0037	6550	1	0	0	0	0	1	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0038	6550	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0039	6505	1	0	1	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0040	6552	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0041	6553	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0042	6552	1	0	1	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0043	6552	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0044	6552	1	0	0	0	0	1	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0045	6551	1	0	0	0	0	1	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0046	6554	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0047	6551	1	0	0	0	0	1	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0048	6552	1	0	0	0	0	1	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0049	6548	1	0	0	1	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0050	6552	1	0	0	0	0	1	copy fasta	GMPS	chr3	155865650	155949020