JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GMPS_chr3_155865650_155949020	0/0	t0051	6553	1	0	1	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0052	6554	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	t0053	6553	1	0	0	0	0	1	copy fasta	GMPS	chr3	155865650	155949020
GNA11_chr19_3089362_3128999	1/0	t0001	3111	65	18	11	25	2	8	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0002	3112	53	1	7	35	1	9	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0003	3110	42	6	9	21	3	3	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0004	3109	23	1	10	7	3	2	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0005	3114	22	0	6	11	0	5	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0006	3111	15	4	5	1	5	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0007	3112	13	1	2	8	0	2	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0008	3111	13	12	1	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0009	3115	12	0	2	10	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0010	3109	12	0	2	10	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0011	3111	11	11	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0012	3111	8	4	0	4	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0013	3112	8	4	0	1	0	3	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0014	3112	6	0	0	5	0	1	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0015	3110	5	5	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0016	3113	5	0	2	3	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0017	3113	5	0	0	5	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0018	3109	5	0	4	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0019	3110	5	1	0	4	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0020	3109	4	0	0	4	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0021	3111	4	1	2	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0022	3111	3	3	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0023	3111	3	0	0	0	0	3	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0024	3111	3	3	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0025	3109	3	0	0	0	0	3	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0026	3111	2	2	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0027	3114	2	2	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0028	3114	2	0	0	2	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0029	3114	2	0	0	2	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0030	3108	2	0	2	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0031	3111	2	0	2	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0032	3111	2	0	0	2	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0033	3111	2	0	0	1	0	1	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0034	3109	2	1	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0035	3112	2	0	1	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0036	3111	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0037	3112	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0038	3112	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0039	3112	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0040	3111	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0041	3110	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0042	3110	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0043	3114	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0044	3115	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0045	3112	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0046	3113	1	0	1	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0047	3112	1	0	0	0	0	1	copy fasta	GNA11	chr19	3089362	3128999