Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALKBH1_chr14_77667404_77713023	0/0	t0013	1428	1	0	0	0	0	1	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	t0014	1428	1	0	0	1	0	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH2_chr12_109083189_109098472	1/1	t0001	395	456	84	83	226	16	45	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	t0002	395	5	4	1	0	0	0	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	t0003	398	4	4	0	0	0	0	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	t0004	395	1	0	0	0	0	1	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	t0005	382	1	0	0	1	0	0	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	t0006	395	1	1	0	0	0	0	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	t0007	395	1	0	0	1	0	0	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	t0008	395	1	1	0	0	0	0	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH3_chr11_43875831_43925274	1/1	t0001	684	225	29	38	122	9	25	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	t0002	684	68	25	13	18	2	10	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	t0003	684	27	5	15	5	0	2	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	t0004	684	25	18	6	0	1	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	t0005	684	15	10	4	0	0	1	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	t0006	684	8	6	0	0	2	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	t0007	684	5	5	0	0	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	t0008	684	1	0	1	0	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	t0009	684	1	0	1	0	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	t0010	684	1	0	0	1	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH4_chr7_102451238_102469863	1/1	t0001	1184	252	60	55	89	16	30	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0002	1184	107	3	21	70	2	11	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0003	1183	9	9	0	0	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0004	1184	8	3	2	0	0	3	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0005	1184	4	4	0	0	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0006	1180	4	4	0	0	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0007	1185	4	2	0	1	0	1	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0008	1184	2	2	0	0	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0009	1180	2	2	0	0	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0010	1185	2	0	0	2	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0011	1184	2	0	2	0	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0012	1184	2	2	0	0	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0013	1184	2	0	0	2	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0014	1184	1	1	0	0	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0015	1184	1	0	0	1	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0016	1184	1	0	0	1	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	t0017	1184	1	0	0	0	0	1	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH5_chr17_18178828_18214954	0/0	t0001	1975	133	16	12	97	1	7	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0002	1975	117	18	15	64	1	19	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0003	1968	65	14	19	22	4	6	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0004	1975	45	20	13	0	4	8	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0005	1968	12	10	2	0	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0006	1976	9	9	0	0	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0007	1975	8	5	1	2	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/1	t0008	1975	5	1	3	0	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0009	1975	4	0	3	0	0	1	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0010	1968	3	0	0	3	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0011	1975	2	0	1	0	0	1	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	1/0	t0012	1975	2	0	0	0	0	1	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0013	1975	2	0	0	2	0	0	copy fasta	ALKBH5	chr17	18178828	18214954