JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNA11_chr19_3089362_3128999	0/0	t0048	3116	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0049	3111	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0050	3109	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0051	3109	1	0	1	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0052	3109	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0053	3109	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0054	3113	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0055	3113	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0056	3114	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0057	3111	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0058	3112	1	0	0	0	0	1	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0059	3112	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0060	3113	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0061	3112	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0062	3112	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0063	3112	1	0	0	0	0	1	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0064	3112	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0065	3112	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0066	3112	1	0	0	0	0	1	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0067	3112	1	0	1	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0068	3112	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0069	3111	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0070	3111	1	0	1	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0071	3111	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0072	3110	1	0	0	0	1	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0073	3110	1	0	1	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0074	3111	1	0	0	0	0	1	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0075	3111	1	0	1	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0076	3111	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0077	3111	1	0	0	0	0	1	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0078	3111	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0079	3111	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0080	3111	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0081	3111	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0082	3109	1	0	0	0	1	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0083	3110	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0084	3110	1	0	1	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0085	3110	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0086	3110	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0087	3109	1	0	0	0	1	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0088	3110	1	0	1	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0089	3109	1	0	0	0	1	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0090	3111	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0091	3110	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	t0092	3114	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA12_chr7_2723105_2849308	0/0	t0001	3224	73	11	14	33	7	8	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0002	3220	58	28	16	12	0	2	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	1/1	t0003	3224	57	0	6	35	2	12	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0004	3222	36	10	5	10	2	9	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0005	3224	18	1	11	1	2	3	copy fasta	GNA12	chr7	2723105	2849308