JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNA12_chr7_2723105_2849308	0/0	t0006	3224	10	0	0	10	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0007	3224	10	5	1	3	0	1	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0008	3222	9	0	0	8	0	1	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0009	3224	4	4	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0010	3224	4	0	0	4	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0011	3220	4	4	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0012	3220	4	4	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0013	3224	3	0	0	3	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0014	3224	3	3	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0015	3224	2	2	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0016	3226	2	0	0	0	0	2	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0017	3224	2	2	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0018	3224	2	0	1	0	1	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0019	3224	2	1	1	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0020	3220	2	0	0	0	0	2	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0021	3220	2	2	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0022	3224	1	0	0	1	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0023	3224	1	0	0	1	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0024	3224	1	0	0	1	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0025	3224	1	0	1	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0026	3224	1	1	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0027	3224	1	1	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0028	3224	1	1	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0029	3224	1	1	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0030	3224	1	1	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0031	3224	1	0	0	1	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0032	3224	1	1	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0033	3222	1	0	0	1	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0034	3220	1	1	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0035	3224	1	1	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	t0036	3220	1	1	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA13_chr17_65004289_65061740	0/0	t0001	5116	92	30	24	22	1	15	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/1	t0002	5113	15	3	4	1	1	5	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0003	5116	13	12	1	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0004	5117	11	10	1	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0005	5116	8	8	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	1/0	t0006	5116	5	4	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0007	5113	5	4	1	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0008	5116	4	2	2	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0009	5112	3	2	1	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0010	5116	3	3	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0011	5119	3	0	1	0	0	2	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0012	5116	2	0	0	2	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0013	5116	2	2	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0014	5116	1	0	0	0	0	1	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0015	5116	1	1	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0016	5112	1	1	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0017	5116	1	1	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0018	5116	1	1	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0019	5116	1	0	0	0	0	1	copy fasta	GNA13	chr17	65004289	65061740