JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNA13_chr17_65004289_65061740	0/0	t0020	5116	1	1	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0021	5116	1	0	0	1	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0022	5116	1	1	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0023	5116	1	1	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0024	5116	1	1	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0025	5119	1	0	0	0	0	1	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0026	5119	1	0	1	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	t0027	5116	1	0	0	0	0	1	copy fasta	GNA13	chr17	65004289	65061740
GNA14_chr9_77418079_77653322	0/1	t0001	1430	97	41	26	22	2	5	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0002	1430	40	14	11	13	0	2	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0003	1430	28	0	10	13	0	5	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0004	1430	14	2	0	12	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0005	1430	10	0	4	5	0	1	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0006	1430	6	5	1	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0007	1430	6	1	1	4	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0008	1430	6	1	2	2	0	1	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0009	1430	4	4	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0010	1426	4	4	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0011	1430	4	2	1	1	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0012	1430	4	1	1	2	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0013	1430	3	3	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0014	1430	3	2	0	1	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0015	1430	2	2	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0016	1430	2	0	1	1	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0017	1430	2	0	0	1	0	1	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	1/0	t0018	1430	1	0	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0019	1430	1	0	0	0	0	1	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0020	1430	1	1	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0021	1430	1	1	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	t0022	1430	1	0	0	1	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA15_chr19_3131033_3168749	1/0	t0001	1149	395	75	72	189	13	45	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0002	1149	9	7	2	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/1	t0003	1149	9	0	6	0	0	2	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0004	1149	6	6	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0005	1149	6	0	2	0	3	1	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0006	1149	4	1	1	0	2	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0007	1149	3	0	0	3	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0008	1149	2	2	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0009	1149	2	2	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0010	1149	2	2	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0011	1149	2	2	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0012	1149	1	1	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0013	1149	1	0	0	1	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0014	1149	1	0	0	1	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0015	1149	1	1	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0016	1149	1	0	0	0	0	1	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0017	1149	1	1	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0018	1149	1	0	0	1	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0019	1149	1	0	0	0	0	1	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	t0020	1149	1	0	1	0	0	0	copy fasta	GNA15	chr19	3131033	3168749