JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNAI2_chr3_50231204_50264362	0/0	t0011	1152	1	0	0	1	0	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	t0012	1152	1	1	0	0	0	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	t0013	1152	1	0	1	0	0	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	t0014	1152	1	0	1	0	0	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI3_chr1_109543615_109605195	0/0	t0001	7979	62	2	14	38	1	7	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0002	7974	34	7	6	15	1	5	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0003	7967	32	0	1	30	0	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/1	t0004	7980	24	10	4	4	0	5	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	1/0	t0005	7980	13	2	7	0	2	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0006	7980	10	1	2	7	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0007	7977	8	8	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0008	7978	8	8	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0009	7979	5	0	4	0	1	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0010	7975	5	5	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0011	7979	4	4	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0012	7979	4	0	3	0	0	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0013	7979	4	0	0	4	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0014	7979	4	0	0	4	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0015	7980	4	4	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0016	7967	4	0	0	4	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0017	7979	4	0	0	3	0	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0018	7978	3	0	0	0	0	3	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0019	7977	3	3	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0020	7977	3	3	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0021	7980	3	1	1	0	0	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0022	7978	3	2	0	1	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0023	7979	2	2	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0024	7978	2	2	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0025	7979	2	2	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0026	7979	2	0	0	2	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0027	7980	2	0	0	2	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0028	7974	2	2	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0029	7975	2	1	0	0	0	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0030	7977	2	2	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0031	7980	1	0	0	0	0	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0032	7978	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0033	7977	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0034	7978	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0035	7976	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0036	7978	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0037	7977	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0038	7975	1	0	0	0	0	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0039	7974	1	0	0	0	0	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0040	7977	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0041	7979	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0042	7979	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0043	7979	1	0	1	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0044	7977	1	0	0	0	1	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0045	7978	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0046	7979	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195