JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNAI3_chr1_109543615_109605195	0/0	t0047	7980	1	0	0	0	1	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0048	7980	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0049	7978	1	0	1	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0050	7977	1	0	0	0	0	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0051	7979	1	0	0	1	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0052	7979	1	0	1	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0053	7979	1	0	0	1	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0054	7979	1	0	0	1	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0055	7979	1	0	0	0	0	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0056	7979	1	0	1	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0057	7979	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0058	7979	1	0	0	1	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0059	7979	1	0	0	0	1	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0060	7980	1	0	0	1	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0061	7980	1	0	0	0	0	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0062	7980	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0063	7978	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0064	7977	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0065	7979	1	0	1	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0066	7979	1	0	0	1	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0067	7980	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0068	7980	1	0	1	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0069	7981	1	0	0	0	0	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0070	7974	1	0	1	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0071	7966	1	0	0	1	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0072	7967	1	0	0	1	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0073	7967	1	0	0	1	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0074	7961	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0075	7974	1	0	0	0	0	1	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0076	7974	1	0	0	1	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0077	7976	1	0	1	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0078	7976	1	0	0	1	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0079	7976	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	t0080	7980	1	0	0	1	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAL_chr18_11684264_11890685	1/0	t0001	4851	9	0	4	1	1	2	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0002	4851	9	1	2	5	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0003	4856	6	6	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0004	4856	5	0	0	5	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0005	4851	4	0	3	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0006	4857	3	0	0	3	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0007	4856	3	0	0	3	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0008	4856	3	0	0	3	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0009	4851	3	0	1	2	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0010	4844	3	0	1	1	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0011	4850	2	2	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0012	4851	2	2	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0013	4851	2	2	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0014	4856	2	2	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0015	4852	2	0	0	1	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0016	4856	2	0	0	2	0	0	copy fasta	GNAL	chr18	11684264	11890685