JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNAL_chr18_11684264_11890685	0/0	t0017	4851	2	0	0	0	2	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0018	4845	2	0	0	2	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0019	4851	2	0	0	2	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0020	4853	2	0	0	0	0	2	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0021	4840	2	0	1	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0022	4851	2	2	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0023	4846	2	0	0	2	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0024	4844	2	0	2	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0025	4844	2	1	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0026	4845	2	1	0	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0027	4846	2	1	0	0	1	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0028	4856	2	2	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0029	4848	2	2	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0030	4851	2	0	1	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0031	4850	2	2	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0032	4855	2	0	2	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0033	4844	2	0	2	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0034	4855	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0035	4854	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0036	4841	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0037	4852	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0038	4851	1	0	0	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0039	4851	1	0	0	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0040	4857	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0041	4851	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0042	4851	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0043	4848	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0044	4853	1	0	0	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0045	4857	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0046	4848	1	0	0	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0047	4851	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0048	4851	1	0	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0049	4856	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0050	4851	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0051	4840	1	0	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0052	4848	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0053	4855	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0054	4853	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0055	4847	1	0	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0056	4847	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0057	4852	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0058	4855	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0059	4844	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0060	4861	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0061	4856	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0062	4847	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0063	4847	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0064	4853	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0065	4859	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0066	4852	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685