Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALKBH5_chr17_18178828_18214954	0/0	t0014	1975	2	2	0	0	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0015	1975	1	0	0	1	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0016	1975	1	0	0	0	0	1	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0017	1975	1	1	0	0	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0018	1975	1	0	1	0	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0019	1975	1	0	0	1	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0020	1968	1	1	0	0	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0021	1968	1	1	0	0	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0022	1968	1	0	0	1	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	t0023	1976	1	0	0	1	0	0	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH6_chr19_36004120_36019213	1/1	t0001	235	391	94	80	161	12	42	copy fasta	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	t0002	235	1	0	0	1	0	0	copy fasta	ALKBH6	chr19	36004120	36019213
ALKBH7_chr19_6367794_6380250	1/1	t0001	305	362	84	67	161	14	34	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	t0002	305	9	6	3	0	0	0	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	t0003	293	1	0	0	1	0	0	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH8_chr11_107497727_107570735	1/0	t0001	2073	276	56	53	143	7	16	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/1	t0002	2073	76	0	16	39	6	14	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0003	2073	9	9	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0004	2073	5	5	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0005	2073	4	0	0	4	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0006	2073	4	0	1	0	1	2	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0007	2073	4	4	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0008	2077	4	4	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0009	2073	3	3	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0010	2077	3	3	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0011	2073	2	2	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0012	2073	2	0	0	2	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0013	2073	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0014	2073	1	0	0	1	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0015	2073	1	0	1	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0016	2073	1	0	1	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0017	2073	1	0	0	0	0	1	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0018	2073	1	0	0	1	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0019	2073	1	0	0	0	0	1	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	t0020	2073	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALK_chr2_29187774_29926586	0/0	t0001	1378	36	21	10	2	3	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0002	1382	18	9	4	2	1	2	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0003	1378	6	6	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0004	1378	4	4	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0005	1378	4	4	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0006	1382	2	2	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0007	1378	2	2	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0008	1378	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0009	1382	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0010	1378	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0011	1378	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0012	1378	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0013	1378	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0014	1378	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	t0015	1378	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586