JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNAL_chr18_11684264_11890685	0/0	t0117	4851	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0118	4851	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0119	4851	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0120	4856	1	0	0	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0121	4852	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0122	4845	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0123	4850	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0124	4848	1	0	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0125	4856	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0126	4855	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0127	4853	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0128	4846	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0129	4846	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0130	4844	1	0	0	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0131	4849	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0132	4847	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0133	4851	1	0	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0134	4845	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0135	4848	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0136	4847	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0137	4847	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0138	4855	1	0	0	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0139	4845	1	0	0	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0140	4851	1	0	0	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0141	4856	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0142	4846	1	0	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0143	4844	1	0	0	1	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0144	4844	1	0	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/1	t0145	4847	1	0	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0146	4851	1	0	0	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0147	4851	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0148	4862	1	0	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0149	4854	1	0	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0150	4855	1	0	0	0	1	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0151	4852	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0152	4853	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0153	4852	1	0	0	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0154	4847	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0155	4840	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0156	4854	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0157	4845	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0158	4852	1	0	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0159	4856	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0160	4855	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0161	4853	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0162	4858	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0163	4857	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0164	4853	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0165	4848	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0166	4853	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685