JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNAL_chr18_11684264_11890685	0/0	t0167	4858	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0168	4856	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0169	4844	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0170	4857	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0171	4863	1	0	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0172	4856	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0173	4856	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0174	4862	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0175	4854	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0176	4854	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0177	4857	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0178	4853	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0179	4861	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0180	4856	1	0	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0181	4857	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0182	4857	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0183	4840	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0184	4845	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0185	4846	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0186	4844	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	t0187	4852	1	1	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11747085_11890685	0/0	t0001	4900	20	1	4	9	2	4	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	1/0	t0002	4900	13	0	5	2	1	4	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0003	4905	9	9	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0004	4905	7	0	0	7	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0005	4893	6	1	4	1	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0006	4905	5	0	1	4	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0007	4901	4	0	0	4	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0008	4900	4	0	0	3	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0009	4900	4	3	0	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0010	4905	3	0	0	3	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0011	4902	3	0	0	0	0	3	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0012	4901	3	0	1	1	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0013	4900	3	0	1	2	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0014	4900	3	0	0	3	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0015	4889	3	0	2	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0016	4898	3	0	0	3	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0017	4896	3	0	0	3	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0018	4893	3	0	0	3	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0019	4905	3	3	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0020	4897	2	2	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0021	4902	2	0	0	2	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0022	4905	2	0	0	2	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0023	4906	2	0	0	2	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0024	4901	2	0	0	1	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0025	4906	2	1	0	1	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0026	4900	2	0	0	0	2	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0027	4906	2	0	0	2	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0028	4905	2	0	0	2	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0029	4894	2	0	0	2	0	0	copy fasta	GNAL	chr18	11747085	11890685