JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
GNAL_chr18_11747085_11890685	0/0	t0030	4902	2	0	0	2	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0031	4905	2	0	0	1	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0032	4904	2	0	0	2	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0033	4900	2	1	1	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0034	4900	2	2	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0035	4899	2	2	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0036	4904	2	0	2	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0037	4902	2	2	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0038	4895	2	0	0	2	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0039	4893	2	0	2	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0040	4893	2	1	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0041	4902	2	2	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0042	4894	2	1	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0043	4899	2	2	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0044	4905	2	2	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0045	4893	2	0	2	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0046	4900	2	2	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0047	4903	2	0	2	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0048	4902	2	2	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0049	4901	2	1	1	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0050	4901	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0051	4900	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0052	4890	1	1	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0053	4902	1	1	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0054	4900	1	0	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0055	4906	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0056	4905	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0057	4904	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0058	4906	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0059	4905	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0060	4897	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0061	4901	1	0	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0062	4914	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0063	4904	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0064	4895	1	0	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0065	4901	1	0	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0066	4901	1	0	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0067	4907	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0068	4905	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0069	4905	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0070	4904	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0071	4903	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0072	4898	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0073	4902	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0074	4901	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0075	4900	1	0	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0076	4896	1	0	1	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0077	4900	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0078	4906	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0079	4905	1	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685