JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNAL_chr18_11747085_11890685	0/0	t0130	4896	1	0	0	1	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0131	4896	1	0	0	1	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0132	4904	1	0	0	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0133	4894	1	0	0	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0134	4896	1	0	0	1	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0135	4901	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0136	4907	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0137	4900	1	0	0	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0138	4899	1	0	0	0	1	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0139	4904	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0140	4895	1	0	1	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0141	4895	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0142	4893	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/1	t0143	4896	1	0	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0144	4900	1	0	0	1	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0145	4900	1	0	0	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0146	4906	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0147	4912	1	0	1	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0148	4910	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0149	4905	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0150	4911	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0151	4903	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0152	4903	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0153	4906	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0154	4896	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0155	4896	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0156	4910	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0157	4905	1	0	1	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0158	4906	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0159	4908	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0160	4906	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0161	4901	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0162	4889	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0163	4901	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0164	4894	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0165	4889	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0166	4895	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0167	4893	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0168	4899	1	0	0	1	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0169	4904	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0170	4903	1	1	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	t0171	4903	1	0	0	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAO1_chr16_56186489_56362444	1/0	t0001	2118	110	28	20	39	10	12	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0002	2116	36	10	5	6	5	10	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0003	2116	33	6	4	18	0	5	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0004	2117	32	11	3	10	3	5	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0005	2117	15	1	3	11	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/1	t0006	2117	13	0	4	6	0	2	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0007	2118	10	0	10	0	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0008	2117	7	0	0	7	0	0	copy fasta	GNAO1	chr16	56186489	56362444