JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNAO1_chr16_56186489_56362444	0/0	t0009	2122	6	0	0	6	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0010	2118	4	0	0	2	0	2	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0011	2117	4	0	0	3	0	1	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0012	2118	4	4	0	0	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0013	2114	3	3	0	0	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0014	2118	3	3	0	0	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0015	2117	3	0	1	0	0	2	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0016	2121	2	0	0	2	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0017	2118	2	2	0	0	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0018	2117	1	0	0	1	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0019	2121	1	0	0	1	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0020	2121	1	0	0	1	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0021	2113	1	1	0	0	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0022	2113	1	0	0	1	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0023	2118	1	0	0	1	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0024	2118	1	0	0	1	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0025	2118	1	0	0	0	0	1	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0026	2130	1	0	0	1	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0027	2118	1	1	0	0	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	t0028	2117	1	0	0	1	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAQ_chr9_77711097_78036811	1/0	t0001	5803	37	6	2	20	2	6	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0002	5805	32	1	6	24	0	1	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0003	5808	25	0	4	16	1	4	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0004	5806	15	2	8	3	0	2	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0005	5807	14	4	4	5	0	1	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0006	5806	13	0	0	12	0	1	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0007	5809	8	1	1	4	0	2	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0008	5806	7	3	2	2	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0009	5804	7	4	2	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0010	5805	6	6	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0011	5803	5	4	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0012	5804	5	4	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0013	5801	5	5	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0014	5798	4	0	0	0	0	4	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0015	5804	4	1	2	0	1	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0016	5804	3	0	2	0	1	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0017	5804	3	3	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0018	5808	3	0	3	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0019	5810	3	3	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0020	5806	2	0	0	1	0	1	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0021	5803	2	0	0	2	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0022	5807	2	0	2	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0023	5806	2	0	1	0	0	1	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0024	5804	2	2	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0025	5805	2	2	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/1	t0026	5804	2	0	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0027	5807	2	1	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0028	5803	2	2	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0029	5807	2	0	1	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0030	5807	2	0	0	2	0	0	copy fasta	GNAQ	chr9	77711097	78036811