JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNAQ_chr9_77711097_78036811	0/0	t0031	5806	2	1	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0032	5804	2	2	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0033	5803	2	2	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0034	5805	1	0	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0035	5805	1	0	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0036	5807	1	0	0	0	0	1	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0037	5805	1	0	0	0	0	1	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0038	5804	1	0	0	0	1	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0039	5803	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0040	5805	1	0	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0041	5806	1	0	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0042	5804	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0043	5808	1	0	0	0	0	1	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0044	5804	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0045	5803	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0046	5808	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0047	5803	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0048	5806	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0049	5806	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0050	5805	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0051	5805	1	0	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0052	5805	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0053	5804	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0054	5808	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0055	5810	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0056	5805	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0057	5804	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0058	5810	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0059	5809	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0060	5808	1	0	0	0	0	1	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0061	5782	1	0	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0062	5809	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0063	5806	1	0	0	0	0	1	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0064	5807	1	0	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0065	5808	1	0	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0066	5807	1	0	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0067	5806	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0068	5805	1	0	0	0	0	1	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0069	5803	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0070	5804	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0071	5805	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0072	5802	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0073	5800	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0074	5803	1	0	0	0	0	1	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0075	5809	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0076	5807	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0077	5808	1	0	1	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0078	5807	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0079	5804	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0080	5805	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811