JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNAQ_chr9_77711097_78036811	0/0	t0081	5804	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0082	5804	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0083	5802	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0084	5803	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0085	5801	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0086	5809	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0087	5801	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	t0088	5803	1	1	0	0	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAS_chr20_58834748_58916192	0/0	t0001	1814	64	23	23	10	5	3	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0002	1814	64	14	14	26	2	8	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/1	t0003	1814	58	4	16	22	6	9	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	1/0	t0004	1814	38	8	7	18	0	4	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0005	1814	13	12	1	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0006	1814	13	8	3	0	0	2	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0007	1814	9	0	0	9	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0008	1814	6	0	0	6	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0009	1814	3	0	2	0	0	1	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0010	1814	3	2	1	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0011	1814	3	0	0	3	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0012	1814	3	3	0	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0013	1814	3	3	0	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0014	1814	2	2	0	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0015	1814	2	0	0	2	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0016	1814	2	1	0	0	1	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0017	1814	2	2	0	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0018	1814	2	1	1	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0019	1814	2	2	0	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0020	1814	1	0	0	0	0	1	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0021	1814	1	0	1	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0022	1814	1	0	1	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0023	1814	1	1	0	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0024	1814	1	1	0	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0025	1814	1	1	0	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0026	1814	1	1	0	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0027	1814	1	1	0	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0028	1814	1	1	0	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	t0029	1814	1	1	0	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58847716_58916192	1/1	t0001	914	238	62	58	75	14	27	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	t0002	914	36	27	6	2	0	1	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	t0003	914	21	0	0	21	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	t0004	914	4	4	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	t0005	914	2	0	2	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	t0006	914	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58886421_58916192	1/1	t0001	670	395	96	80	160	16	41	copy fasta	GNAS	chr20	58886421	58916192
GNAS_chr20_58886421_58916192	0/0	t0002	670	35	0	0	35	0	0	copy fasta	GNAS	chr20	58886421	58916192
GNAS_chr20_58886421_58916192	0/0	t0003	697	1	0	0	0	0	1	copy fasta	GNAS	chr20	58886421	58916192
GNAS_chr20_58886421_58916192	0/0	t0004	640	1	0	0	1	0	0	copy fasta	GNAS	chr20	58886421	58916192
GNAT1_chr3_50186610_50202696	0/1	t0001	2546	134	6	20	97	4	6	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	1/0	t0002	2546	126	19	24	47	10	25	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	t0003	2546	54	30	17	0	2	5	copy fasta	GNAT1	chr3	50186610	50202696