JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNAT1_chr3_50186610_50202696	0/0	t0004	2546	33	28	3	1	0	1	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	t0005	2546	7	7	0	0	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	t0006	2546	3	3	0	0	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	t0007	2546	2	0	0	2	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	t0008	2546	2	0	2	0	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	t0009	2546	1	0	1	0	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	t0010	2546	1	1	0	0	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	t0011	2546	1	0	0	1	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	t0012	2546	1	0	1	0	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	t0013	2546	1	0	0	0	0	1	copy fasta	GNAT1	chr3	50186610	50202696
GNAT2_chr1_109598091_109624616	1/1	t0001	451	179	81	26	48	5	17	copy fasta	GNAT2	chr1	109598091	109624616
GNAT2_chr1_109598091_109624616	0/0	t0002	427	117	5	19	73	5	15	copy fasta	GNAT2	chr1	109598091	109624616
GNAT2_chr1_109598091_109624616	0/0	t0003	451	45	6	7	20	2	10	copy fasta	GNAT2	chr1	109598091	109624616
GNAT2_chr1_109598091_109624616	0/0	t0004	427	2	0	0	2	0	0	copy fasta	GNAT2	chr1	109598091	109624616
GNAT2_chr1_109598091_109624616	0/0	t0005	427	1	0	0	1	0	0	copy fasta	GNAT2	chr1	109598091	109624616
GNAT3_chr7_80453635_80517064	0/0	t0001	175	183	39	27	97	3	17	copy fasta	GNAT3	chr7	80453635	80517064
GNAT3_chr7_80453635_80517064	1/1	t0002	175	147	49	35	33	11	17	copy fasta	GNAT3	chr7	80453635	80517064
GNAT3_chr7_80453635_80517064	0/0	t0003	173	4	4	0	0	0	0	copy fasta	GNAT3	chr7	80453635	80517064
GNAZ_chr22_23065519_23130032	0/0	t0001	2104	129	19	34	53	8	15	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	1/1	t0002	2103	99	15	19	43	3	17	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0003	2105	12	12	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0004	2104	11	10	1	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0005	2104	10	10	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0006	2104	9	0	4	5	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0007	2105	7	0	2	4	1	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0008	2103	6	6	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0009	2104	6	0	0	0	0	6	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0010	2102	4	0	0	4	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0011	2104	4	4	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0012	2105	3	0	1	2	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0013	2103	3	0	0	3	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0014	2104	2	2	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0015	2104	2	2	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0016	2105	2	2	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0017	2113	1	0	0	1	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0018	2103	1	1	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0019	2104	1	0	0	0	0	1	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0020	2105	1	1	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0021	2105	1	1	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0022	2103	1	0	0	0	0	1	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0023	2104	1	0	0	0	0	1	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0024	2104	1	0	0	0	1	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0025	2104	1	0	0	1	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0026	2103	1	1	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0027	2103	1	1	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0028	2103	1	1	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0029	2105	1	1	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0030	2103	1	0	0	1	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0031	2103	1	0	0	0	0	1	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0032	2103	1	1	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032