JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNAZ_chr22_23065519_23130032	0/0	t0033	2103	1	0	0	0	1	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0034	2103	1	0	0	1	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0035	2103	1	0	0	1	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0036	2103	1	0	0	1	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0037	2103	1	0	0	1	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0038	2103	1	0	1	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0039	2103	1	1	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0040	2104	1	0	0	1	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	t0041	2104	1	1	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNB1L_chr22_19778223_19859874	1/0	t0001	5659	92	18	20	37	4	12	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0002	5660	43	0	3	31	4	5	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0003	5657	40	2	16	3	3	16	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0004	5660	17	0	1	15	1	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0005	5661	13	0	0	11	0	2	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0006	5657	11	0	0	11	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0007	5659	8	1	3	2	2	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0008	5661	6	6	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0009	5659	5	5	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0010	5655	5	5	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0011	5659	4	4	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0012	5655	4	4	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0013	5662	4	0	2	2	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0014	5659	3	0	0	3	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0015	5655	3	3	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0016	5658	3	2	1	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0017	5655	3	3	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0018	5659	2	0	0	2	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0019	5659	2	1	1	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0020	5661	2	2	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0021	5659	2	2	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0022	5659	2	2	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0023	5659	2	2	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/1	t0024	5659	2	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0025	5659	2	0	2	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0026	5659	2	0	0	2	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0027	5659	2	0	0	2	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0028	5659	2	0	1	1	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0029	5661	2	2	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0030	5661	2	2	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0031	5660	2	0	2	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0032	5659	1	0	0	1	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0033	5659	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0034	5659	1	0	0	1	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0035	5661	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0036	5661	1	0	1	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0037	5661	1	0	0	1	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0038	5661	1	0	1	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0039	5661	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0040	5657	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0041	5661	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874