Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALLC_chr2_3653200_3707671	1/0	t0001	266	140	35	42	48	8	6	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/1	t0002	266	124	43	19	45	4	12	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	t0003	266	5	5	0	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	t0004	266	4	3	1	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	t0005	241	1	0	0	1	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALMS1_chr2_73380836_73614916	1/1	t0001	338	214	82	41	63	7	19	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	t0002	338	30	4	16	2	1	7	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	t0003	338	2	2	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	t0004	338	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	t0005	338	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALOX12B_chr17_8067636_8092716	1/0	t0001	410	277	41	52	147	12	24	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/1	t0002	410	166	41	36	66	6	16	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	t0003	410	16	12	0	0	0	4	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	t0004	410	3	0	0	3	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12_chr17_6991049_7015754	1/0	t0001	401	395	89	71	176	14	44	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/1	t0002	401	4	0	3	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	t0003	401	3	0	0	3	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	t0004	401	1	1	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	t0005	401	1	0	0	1	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX15B_chr17_8034059_8054134	1/0	t0001	667	206	25	48	92	8	32	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0002	667	140	26	34	63	7	10	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0003	667	46	21	2	22	0	1	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/1	t0004	667	41	7	0	27	2	4	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0005	667	8	0	0	8	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0006	667	8	8	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0007	667	6	6	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0008	667	3	0	0	3	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0009	667	2	0	1	1	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0010	667	2	1	1	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0011	667	1	0	0	1	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0012	667	1	0	0	1	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0013	648	1	0	0	0	0	1	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0014	667	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0015	667	1	0	0	0	1	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0016	667	1	0	1	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0017	667	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	t0018	667	1	0	1	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15_chr17_4625919_4646678	1/0	t0001	709	279	70	44	127	7	30	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/1	t0002	709	157	17	30	90	5	14	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	t0003	709	18	2	13	1	2	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	t0004	709	9	9	0	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	t0005	709	4	0	1	0	0	3	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	t0006	709	1	1	0	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	t0007	709	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	t0008	721	1	0	0	0	0	1	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	t0009	709	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	t0010	709	1	1	0	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX5AP_chr13_30730543_30769426	1/1	t0001	384	384	64	75	187	15	41	copy fasta	ALOX5AP	chr13	30730543	30769426
ALOX5AP_chr13_30730543_30769426	0/0	t0002	384	28	15	3	2	1	7	copy fasta	ALOX5AP	chr13	30730543	30769426
ALOX5AP_chr13_30730543_30769426	0/0	t0003	384	9	9	0	0	0	0	copy fasta	ALOX5AP	chr13	30730543	30769426