JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNB1L_chr22_19778223_19859874	0/0	t0042	5659	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0043	5661	1	0	1	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0044	5659	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0045	5659	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0046	5659	1	0	1	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0047	5655	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0048	5661	1	0	0	1	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0049	5659	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0050	5659	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0051	5661	1	0	0	0	0	1	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0052	5659	1	0	0	1	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0053	5659	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0054	5659	1	0	1	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0055	5658	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0056	5659	1	0	1	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0057	5655	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0058	5658	1	0	0	1	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0059	5660	1	0	0	1	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0060	5660	1	0	1	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0061	5660	1	0	0	1	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0062	5656	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0063	5658	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0064	5659	1	0	1	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	t0065	5659	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1_chr1_1780286_1896087	1/1	t0001	2141	305	71	45	137	14	36	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0002	2141	8	8	0	0	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0003	2140	5	5	0	0	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0004	2143	2	2	0	0	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0005	2141	1	0	0	1	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0006	2144	1	0	0	1	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0007	2141	1	1	0	0	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0008	2141	1	0	1	0	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0009	2141	1	0	1	0	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0010	2141	1	1	0	0	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0011	2141	1	0	0	1	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0012	2141	1	1	0	0	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0013	2141	1	1	0	0	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0014	2140	1	0	0	1	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0015	2141	1	0	0	1	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0016	2141	1	0	0	1	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0017	2141	1	0	0	1	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0018	2141	1	0	1	0	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0019	2141	1	0	0	1	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	t0020	2141	1	0	0	1	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB2_chr7_100668740_100684169	0/0	t0001	639	219	48	37	104	6	24	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0002	636	56	14	10	25	4	3	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	1/1	t0003	642	31	5	5	11	1	7	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0004	642	13	6	0	3	0	4	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0005	645	8	2	0	4	0	2	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0006	636	6	5	1	0	0	0	copy fasta	GNB2	chr7	100668740	100684169