JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNB2_chr7_100668740_100684169	0/0	t0007	654	5	0	0	0	1	4	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0008	639	5	1	4	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0009	639	5	5	0	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0010	639	4	0	0	4	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0011	645	3	0	2	0	0	1	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0012	645	3	0	0	0	0	3	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0013	639	2	0	0	2	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0014	639	1	0	0	1	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0015	681	1	1	0	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0016	654	1	0	1	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0017	642	1	0	1	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0018	639	1	0	0	1	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0019	639	1	1	0	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0020	639	1	0	0	1	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0021	639	1	1	0	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0022	639	1	0	1	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0023	630	1	1	0	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0024	636	1	1	0	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0025	627	1	1	0	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0026	642	1	0	0	1	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	t0027	639	1	0	0	1	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB3_chr12_6835925_6852393	1/0	t0001	635	197	18	48	89	12	29	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/1	t0002	635	126	42	23	39	4	17	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	t0003	635	91	24	5	62	0	0	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	t0004	635	6	6	0	0	0	0	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	t0005	635	1	1	0	0	0	0	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	t0006	635	1	1	0	0	0	0	copy fasta	GNB3	chr12	6835925	6852393
GNB4_chr3_179391088_179456470	0/0	t0001	5289	71	2	17	46	2	4	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	1/1	t0002	5293	70	7	18	33	0	10	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0003	5285	39	4	2	27	0	6	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0004	5289	37	5	9	12	5	6	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0005	5285	17	6	3	8	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0006	5289	12	0	2	9	1	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0007	5289	9	9	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0008	5293	8	0	0	8	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0009	5293	8	2	4	0	0	2	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0010	5288	8	5	3	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0011	5285	7	1	4	0	1	1	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0012	5293	6	0	0	6	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0013	5289	6	3	1	1	0	1	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0014	5288	6	4	2	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0015	5289	5	3	2	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0016	5288	5	5	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0017	5286	4	1	0	3	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0018	5289	4	0	0	0	0	4	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0019	5288	4	4	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0020	5285	4	0	0	4	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0021	5289	4	0	0	1	0	3	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0022	5289	3	2	1	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0023	5289	2	2	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470