JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNB4_chr3_179391088_179456470	0/0	t0024	5285	2	0	1	0	0	1	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0025	5293	2	0	0	2	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0026	5289	2	2	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0027	5293	2	0	2	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0028	5294	2	2	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0029	5289	2	1	1	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0030	5289	2	0	0	2	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0031	5289	2	0	0	0	0	2	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0032	5290	2	2	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0033	5289	2	2	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0034	5289	2	2	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0035	5289	2	2	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0036	5285	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0037	5289	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0038	5285	1	0	1	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0039	5289	1	0	0	0	0	1	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0040	5290	1	0	1	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0041	5289	1	0	1	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0042	5289	1	0	0	0	0	1	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0043	5289	1	0	0	0	0	1	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0044	5293	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0045	5293	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0046	5292	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0047	5289	1	0	0	0	0	1	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0048	5293	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0049	5289	1	0	0	0	0	1	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0050	5289	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0051	5289	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0052	5289	1	0	0	0	1	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0053	5288	1	0	0	0	0	1	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0054	5289	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0055	5285	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0056	5286	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0057	5286	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0058	5368	1	0	1	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0059	5293	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0060	5285	1	0	1	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0061	5289	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0062	5293	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0063	5289	1	0	1	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0064	5288	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0065	5290	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0066	5288	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0067	5288	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0068	5288	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0069	5285	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0070	5285	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0071	5288	1	1	0	0	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	t0072	5293	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB5_chr15_52110100_52196392	0/0	t0001	7753	41	1	6	32	0	2	copy fasta	GNB5	chr15	52110100	52196392