JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNB5_chr15_52110100_52196392	0/0	t0202	7747	1	1	0	0	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	t0203	7745	1	1	0	0	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	t0204	7854	1	0	1	0	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	t0205	7852	1	0	1	0	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	t0206	7754	1	1	0	0	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	t0207	7741	1	0	1	0	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNE_chr9_36209441_36263448	1/0	t0001	3095	89	13	9	53	4	9	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0002	3127	32	4	5	21	0	2	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0003	3121	16	1	1	13	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0004	3096	15	0	4	11	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0005	3110	14	2	3	6	1	2	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0006	3112	13	1	5	6	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0007	3113	13	1	5	5	1	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0008	3111	10	3	2	4	1	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0009	3123	9	0	0	7	0	2	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/1	t0010	3098	8	0	3	3	1	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0011	3114	7	1	4	1	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0012	3107	6	6	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0013	3122	5	4	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0014	3106	5	4	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0015	3130	4	1	0	2	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0016	3117	4	0	0	2	2	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0017	3129	4	2	0	2	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0018	3121	3	0	2	0	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0019	3117	3	0	0	1	0	2	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0020	3132	3	0	0	0	0	3	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0021	3119	3	0	3	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0022	3097	3	0	3	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0023	3110	3	0	1	0	1	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0024	3125	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0025	3115	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0026	3108	2	0	2	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0027	3106	2	1	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0028	3109	2	0	0	1	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0029	3097	2	0	2	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0030	3133	2	0	0	1	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0031	3126	2	1	0	0	1	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0032	3120	2	0	0	0	0	2	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0033	3129	2	0	1	0	1	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0034	3127	2	0	0	0	0	2	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0035	3125	2	0	0	2	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0036	3121	2	1	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0037	3119	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0038	3131	2	0	0	2	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0039	3101	2	0	2	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0040	3124	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0041	3123	2	1	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0042	3121	2	0	0	1	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0043	3092	2	0	1	0	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0044	3110	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448