JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNE_chr9_36209441_36263448	0/0	t0045	3086	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0046	3124	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0047	3121	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0048	3129	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0049	3121	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0050	3114	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0051	3130	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0052	3114	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0053	3127	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0054	3120	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0055	3114	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0056	3122	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0057	3115	1	0	0	0	1	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0058	3113	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0059	3113	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0060	3111	1	0	0	0	1	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0061	3112	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0062	3116	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0063	3112	1	0	0	0	1	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0064	3110	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0065	3110	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0066	3133	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0067	3119	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0068	3101	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0069	3117	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0070	3105	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0071	3103	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0072	3127	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0073	3107	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0074	3128	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0075	3122	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0076	3131	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0077	3125	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0078	3123	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0079	3121	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0080	3117	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0081	3127	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0082	3124	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0083	3120	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0084	3124	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0085	3113	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0086	3119	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0087	3115	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0088	3097	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0089	3095	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0090	3095	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0091	3129	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0092	3124	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0093	3118	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0094	3116	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448