JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNE_chr9_36209441_36263448	0/0	t0095	3108	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0096	3124	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0097	3130	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0098	3123	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0099	3119	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0100	3117	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	t0101	3109	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36281978	1/0	t0001	2959	80	11	9	46	4	9	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0002	2991	33	5	5	21	0	2	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0003	2985	16	1	1	13	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0004	2960	15	0	4	11	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0005	2974	13	1	3	6	1	2	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0006	2976	12	1	5	5	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0007	2977	11	0	5	4	1	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0008	2975	10	3	2	4	1	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0009	2987	9	0	0	7	0	2	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/1	t0010	2962	9	0	3	4	1	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0011	2978	7	1	4	1	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0012	2971	5	5	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0013	2986	5	4	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0014	2970	5	4	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0015	2985	3	0	2	0	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0016	2981	3	0	0	1	0	2	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0017	2996	3	0	0	0	0	3	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0018	2994	3	1	0	1	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0019	2983	3	0	3	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0020	2981	3	0	0	1	2	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0021	2961	3	0	3	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0022	2974	3	0	1	0	1	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0023	2989	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0024	2979	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0025	2972	2	0	2	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0026	2970	2	1	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0027	2973	2	0	0	1	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0028	2961	2	0	2	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0029	2990	2	1	0	0	1	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0030	2984	2	0	0	0	0	2	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0031	2993	2	0	1	0	1	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0032	2991	2	0	0	0	0	2	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0033	2989	2	0	0	2	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0034	2985	2	1	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0035	2983	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0036	2995	2	0	0	2	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0037	2965	2	0	2	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0038	2988	2	1	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0039	2988	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0040	2987	2	1	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0041	2985	2	0	0	1	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0042	2956	2	0	1	0	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0043	2974	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978