Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALOX5AP_chr13_30730543_30769426	0/0	t0004	384	1	0	0	1	0	0	copy fasta	ALOX5AP	chr13	30730543	30769426
ALOX5_chr10_45369216_45451117	0/1	t0001	495	248	69	36	107	9	26	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	t0002	495	63	16	13	25	5	4	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	t0003	495	17	6	1	9	0	1	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	t0004	493	9	0	3	6	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	t0005	495	2	0	1	1	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	t0006	495	2	0	0	0	0	2	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	t0007	493	2	0	0	2	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	t0008	495	1	0	0	0	0	1	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	t0009	495	1	1	0	0	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOXE3_chr17_8090900_8123514	0/0	t0001	1070	200	22	40	105	6	27	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	1/1	t0002	1070	147	31	28	64	10	12	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0003	1070	27	12	6	6	1	2	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0004	1070	23	13	6	2	1	1	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0005	1070	6	6	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0006	1070	3	3	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0007	1070	2	1	1	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0008	1070	2	2	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0009	1070	2	2	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0010	1070	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0011	1070	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0012	1070	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0013	1070	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0014	1070	1	0	1	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0015	1070	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0016	1070	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0017	1070	1	0	0	1	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0018	1070	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	t0019	1070	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALPG_chr2_232401844_232415714	1/1	t0001	894	350	70	69	150	16	43	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	t0002	894	59	12	5	37	2	3	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	t0003	894	9	5	0	4	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	t0004	894	4	0	0	4	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	t0005	893	4	4	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	t0006	894	3	0	0	3	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	t0007	894	2	2	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	t0008	894	1	0	0	1	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	t0009	894	1	0	0	1	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	t0010	894	1	1	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPI_chr2_232451153_232465753	1/1	t0001	1655	318	81	52	134	17	32	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0002	1655	46	9	15	18	0	4	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0003	1655	22	4	2	10	0	6	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0004	1655	17	0	0	17	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0005	1655	14	0	1	10	1	2	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0006	1655	5	0	0	5	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0007	1655	5	0	0	5	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0008	1655	2	0	0	0	0	2	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0009	1655	2	0	2	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0010	1655	2	2	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0011	1655	2	0	2	0	0	0	copy fasta	ALPI	chr2	232451153	232465753