JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNE_chr9_36209441_36281978	0/0	t0044	2950	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0045	2988	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0046	2985	2	2	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0047	2965	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0048	2993	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0049	2985	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0050	2978	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0051	2994	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0052	2978	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0053	2991	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0054	2984	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0055	2978	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0056	2986	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0057	2979	1	0	0	0	1	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0058	2977	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0059	2977	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0060	2975	1	0	0	0	1	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0061	2980	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0062	2976	1	0	0	0	1	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0063	2974	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0064	2974	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0065	2997	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0066	2971	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0067	2981	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0068	2969	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0069	2967	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0070	2991	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0071	2997	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0072	2971	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0073	2992	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0074	2986	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0075	2995	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0076	2989	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0077	2987	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0078	2985	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0079	2981	1	0	0	0	0	1	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0080	2993	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0081	2991	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0082	2984	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0083	2988	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0084	2977	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0085	2983	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0086	2979	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0087	2961	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0088	2959	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0089	2959	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0090	2993	1	0	0	1	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0091	2988	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0092	2982	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0093	2980	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978