JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNE_chr9_36209441_36281978	0/0	t0094	2972	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0095	2988	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0096	2994	1	0	1	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0097	2987	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0098	2983	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0099	2981	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	t0100	2973	1	1	0	0	0	0	copy fasta	GNE	chr9	36209441	36281978
GNG10_chr9_111656605_111675226	0/0	t0001	995	164	43	27	71	7	16	copy fasta	GNG10	chr9	111656605	111675226
GNG10_chr9_111656605_111675226	0/0	t0002	995	143	10	20	95	4	14	copy fasta	GNG10	chr9	111656605	111675226
GNG10_chr9_111656605_111675226	1/1	t0003	995	84	25	32	8	5	12	copy fasta	GNG10	chr9	111656605	111675226
GNG10_chr9_111656605_111675226	0/0	t0004	995	20	11	1	6	0	2	copy fasta	GNG10	chr9	111656605	111675226
GNG10_chr9_111656605_111675226	0/0	t0005	995	8	6	2	0	0	0	copy fasta	GNG10	chr9	111656605	111675226
GNG10_chr9_111656605_111675226	0/0	t0006	995	3	0	0	0	0	3	copy fasta	GNG10	chr9	111656605	111675226
GNG10_chr9_111656605_111675226	0/0	t0007	995	2	0	0	2	0	0	copy fasta	GNG10	chr9	111656605	111675226
GNG10_chr9_111656605_111675226	0/0	t0008	995	2	1	0	0	0	1	copy fasta	GNG10	chr9	111656605	111675226
GNG10_chr9_111656605_111675226	0/0	t0009	995	1	0	0	1	0	0	copy fasta	GNG10	chr9	111656605	111675226
GNG10_chr9_111656605_111675226	0/0	t0010	995	1	0	0	1	0	0	copy fasta	GNG10	chr9	111656605	111675226
GNG10_chr9_111656605_111675226	0/0	t0011	995	1	0	0	1	0	0	copy fasta	GNG10	chr9	111656605	111675226
GNG10_chr9_111656605_111675226	0/0	t0012	995	1	0	0	1	0	0	copy fasta	GNG10	chr9	111656605	111675226
GNG11_chr7_93916735_93933610	0/1	t0001	2798	202	25	25	128	3	20	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	1/0	t0002	2798	68	8	16	15	12	16	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0003	2798	34	5	5	23	0	1	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0004	2798	21	19	2	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0005	2798	21	0	3	13	3	2	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0006	2798	16	0	4	12	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0007	2798	15	14	1	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0008	2798	10	8	2	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0009	2798	8	0	4	1	0	3	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0010	2798	7	0	7	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0011	2798	4	4	0	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0012	2799	4	0	0	0	0	4	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0013	2798	3	0	3	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0014	2798	3	3	0	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0015	3133	2	2	0	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0016	2798	2	2	0	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0017	2798	1	0	0	1	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0018	2798	1	1	0	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0019	2798	1	1	0	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0020	2798	1	1	0	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0021	2798	1	0	1	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0022	2798	1	1	0	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0023	3137	1	1	0	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0024	2798	1	0	0	1	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0025	2798	1	0	0	0	0	1	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0026	2798	1	0	0	1	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0027	2798	1	1	0	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0028	2798	1	0	0	1	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0029	2798	1	0	0	0	0	1	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0030	2798	1	0	0	1	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0031	2798	1	0	0	1	0	0	copy fasta	GNG11	chr7	93916735	93933610