JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNG11_chr7_93916735_93933610	0/0	t0032	2798	1	0	1	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0033	2798	1	0	1	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	t0034	2799	1	0	1	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG12_chr1_67696475_67838467	1/0	t0001	4177	92	23	8	50	5	5	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0002	4177	83	6	20	47	5	5	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0003	4177	21	7	7	5	1	1	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/1	t0004	4176	16	5	4	3	3	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0005	4177	7	6	1	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0006	4177	6	6	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0007	4177	5	5	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0008	4178	4	4	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0009	4176	3	0	0	3	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0010	4177	2	2	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0011	4177	2	1	1	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0012	4177	2	2	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0013	4178	2	2	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0014	4177	2	0	0	2	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0015	4177	2	2	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0016	4177	2	0	0	1	0	1	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0017	4177	2	0	0	2	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0018	4177	2	2	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0019	4177	2	2	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0020	4177	1	0	1	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0021	4176	1	1	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0022	4176	1	1	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0023	4177	1	1	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0024	4177	1	0	0	0	0	1	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0025	4177	1	0	0	1	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0026	4177	1	0	1	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0027	4177	1	0	0	0	0	1	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0028	4177	1	0	0	0	0	1	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0029	4177	1	0	0	0	0	1	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0030	4177	1	0	0	1	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0031	4177	1	1	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0032	4177	1	1	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0033	4177	1	0	0	1	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0034	4177	1	1	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0035	4177	1	1	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	t0036	4177	1	0	1	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG13_chr16_793041_805734	1/0	t0001	782	239	42	50	107	14	25	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/1	t0002	782	110	21	17	54	4	13	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0003	884	19	0	1	11	0	7	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0004	782	13	5	8	0	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0005	849	8	6	2	0	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0006	849	5	0	0	5	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0007	849	5	3	1	1	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0008	748	5	5	0	0	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0009	782	2	2	0	0	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0010	782	2	2	0	0	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0011	782	2	0	1	0	0	1	copy fasta	GNG13	chr16	793041	805734