JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNG13_chr16_793041_805734	0/0	t0012	782	1	1	0	0	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0013	884	1	0	0	0	0	1	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0014	1058	1	0	0	1	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0015	712	1	0	1	0	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0016	782	1	0	0	1	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0017	782	1	0	0	0	0	1	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0018	782	1	1	0	0	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0019	782	1	0	0	1	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0020	782	1	0	1	0	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0021	782	1	1	0	0	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0022	782	1	0	0	1	0	0	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	t0023	782	1	1	0	0	0	0	copy fasta	GNG13	chr16	793041	805734
GNG14_chr19_12682998_12693422	1/1	t0001	102	299	27	64	146	18	42	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	t0002	102	69	65	4	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	t0003	102	1	0	1	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	t0004	102	1	0	1	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG2_chr14_51855612_51974795	0/0	t0001	3358	84	12	12	42	7	11	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0002	3357	57	12	8	35	0	2	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0003	3362	16	8	4	1	1	2	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0004	3361	15	4	4	3	0	4	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0005	3358	14	2	2	8	0	2	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0006	3359	12	0	3	4	0	5	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0007	3363	11	1	6	0	3	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0008	3362	10	3	4	2	0	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0009	3362	9	0	0	9	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0010	3363	9	0	0	9	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0011	3361	8	0	0	7	0	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	1/0	t0012	3358	6	0	4	0	1	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0013	3360	6	0	0	6	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0014	3361	6	4	0	0	1	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0015	3358	5	3	0	0	1	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0016	3358	5	0	0	5	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0017	3359	5	5	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0018	3359	4	1	0	3	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0019	3360	4	4	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0020	3361	4	2	1	0	1	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0021	3362	4	0	0	4	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0022	3358	4	0	0	4	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0023	3356	3	0	0	3	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0024	3358	3	0	0	3	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0025	3361	3	3	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0026	3359	3	0	0	3	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0027	3361	3	0	0	1	0	2	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0028	3361	3	0	0	3	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0029	3362	3	2	1	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0030	3359	2	0	0	2	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0031	3358	2	0	2	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0032	3358	2	0	0	1	0	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0033	3361	2	2	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0034	3360	2	0	0	2	0	0	copy fasta	GNG2	chr14	51855612	51974795