JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNG2_chr14_51855612_51974795	0/0	t0035	3361	2	2	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0036	3360	2	0	0	1	0	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0037	3361	2	2	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0038	3361	2	2	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0039	3363	2	2	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0040	3361	1	0	0	1	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0041	3362	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0042	3363	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0043	3357	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0044	3360	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0045	3357	1	0	0	1	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0046	3358	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0047	3359	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0048	3358	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/1	t0049	3359	1	0	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0050	3359	1	0	0	0	0	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0051	3359	1	0	0	1	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0052	3359	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0053	3358	1	0	0	0	0	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0054	3358	1	0	0	1	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0055	3359	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0056	3360	1	0	1	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0057	3361	1	0	1	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0058	3361	1	0	0	0	0	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0059	3361	1	0	0	0	0	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0060	3361	1	0	1	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0061	3362	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0062	3361	1	0	0	1	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0063	3362	1	0	0	0	0	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0064	3362	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0065	3362	1	0	1	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0066	3363	1	0	0	0	0	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0067	3363	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0068	3362	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0069	3363	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0070	3363	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0071	3361	1	0	0	1	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0072	3363	1	0	0	0	0	1	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0073	3358	1	0	1	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0074	3357	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0075	3357	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0076	3358	1	1	0	0	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0077	3356	1	0	0	1	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0078	3357	1	0	0	1	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0079	3358	1	0	0	1	0	0	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	t0080	3358	1	0	0	0	1	0	copy fasta	GNG2	chr14	51855612	51974795
GNG3_chr11_62702676_62714201	0/1	t0001	636	346	76	52	166	12	39	copy fasta	GNG3	chr11	62702676	62714201
GNG3_chr11_62702676_62714201	1/0	t0002	636	12	11	0	0	0	0	copy fasta	GNG3	chr11	62702676	62714201
GNG3_chr11_62702676_62714201	0/0	t0003	636	3	3	0	0	0	0	copy fasta	GNG3	chr11	62702676	62714201
GNG3_chr11_62702676_62714201	0/0	t0004	636	1	0	0	0	0	1	copy fasta	GNG3	chr11	62702676	62714201