JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNG4_chr1_235542685_235654784	0/0	t0001	4665	58	0	10	40	1	7	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	1/0	t0002	4670	40	0	2	23	0	14	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0003	4669	23	8	5	7	2	1	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0004	4667	16	11	4	0	0	1	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/1	t0005	4667	13	1	6	2	0	3	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0006	4672	11	5	4	2	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0007	4665	9	0	8	0	0	1	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0008	4667	9	7	2	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0009	4669	9	0	7	2	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0010	4665	7	0	2	5	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0011	4666	5	0	5	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0012	4672	4	4	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0013	4669	4	4	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0014	4667	4	4	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0015	4670	3	0	2	0	0	1	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0016	4667	3	0	2	0	1	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0017	4669	3	3	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0018	4671	3	0	0	3	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0019	4671	3	2	1	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0020	4670	3	0	0	0	1	2	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0021	4665	2	0	0	2	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0022	4669	2	2	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0023	4672	2	0	0	0	0	2	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0024	4672	2	2	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0025	4670	2	1	1	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0026	4672	2	2	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0027	4669	2	2	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0028	4667	2	0	2	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0029	4669	2	0	0	0	1	1	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0030	4670	2	0	0	0	0	2	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0031	4679	2	2	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0032	4671	2	2	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0033	4679	2	2	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0034	4667	1	0	1	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0035	4665	1	0	0	1	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0036	4674	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0037	4669	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0038	4672	1	0	1	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0039	4670	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0040	4669	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0041	4667	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0042	4669	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0043	4673	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0044	4673	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0045	4679	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0046	4668	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0047	4669	1	0	0	1	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0048	4672	1	0	0	1	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0049	4674	1	0	1	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0050	4669	1	0	0	1	0	0	copy fasta	GNG4	chr1	235542685	235654784