JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNG4_chr1_235542685_235654784	0/0	t0101	4668	1	0	0	1	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0102	4672	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0103	4668	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0104	4671	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0105	4667	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0106	4668	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	0/0	t0107	4669	1	1	0	0	0	0	copy fasta	GNG4	chr1	235542685	235654784
GNG5B_chrX_110341454_110351973	1/1	t0001	314	235	65	37	108	5	18	copy fasta	GNG5B	chrX	110341454	110351973
GNG5B_chrX_110341454_110351973	0/0	t0002	314	1	1	0	0	0	0	copy fasta	GNG5B	chrX	110341454	110351973
GNG5_chr1_84493325_84511581	1/1	t0001	600	271	38	52	141	6	32	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	t0002	600	50	25	8	12	1	4	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	t0003	600	22	12	6	0	1	3	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	t0004	600	6	0	2	1	2	1	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	t0005	600	5	5	0	0	0	0	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	t0006	600	5	5	0	0	0	0	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	t0007	600	2	2	0	0	0	0	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	t0008	600	1	1	0	0	0	0	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	t0009	600	1	1	0	0	0	0	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	t0010	600	1	0	1	0	0	0	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	t0011	600	1	0	1	0	0	0	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	t0012	600	1	1	0	0	0	0	copy fasta	GNG5	chr1	84493325	84511581
GNG7_chr19_2506219_2707694	0/0	t0001	3986	27	1	5	16	0	5	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0002	3987	20	1	7	10	1	1	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0003	3986	8	0	1	7	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0004	3987	7	0	2	3	1	1	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/1	t0005	3986	6	1	0	4	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0006	3987	5	1	1	0	1	2	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0007	3987	4	0	2	0	2	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0008	3986	4	0	3	0	0	1	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0009	3987	4	0	1	3	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0010	3987	4	0	4	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0011	3986	4	1	1	0	2	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0012	3987	3	3	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0013	3987	3	3	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	1/0	t0014	3987	3	0	1	0	1	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0015	3987	3	0	2	0	0	1	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0016	3987	3	0	0	3	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0017	3988	3	3	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0018	3987	3	3	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0019	3986	3	3	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0020	3987	2	0	0	0	0	2	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0021	3987	2	2	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0022	3987	2	0	1	0	0	1	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0023	3986	2	2	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0024	3986	2	0	2	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0025	3988	2	2	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0026	3988	2	0	1	0	0	1	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0027	3987	2	0	2	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0028	3986	2	0	2	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0029	3986	2	0	0	0	1	1	copy fasta	GNG7	chr19	2506219	2707694