JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNG7_chr19_2506219_2707694	0/0	t0080	3988	1	1	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0081	3988	1	1	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0082	3987	1	1	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0083	3987	1	0	1	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0084	3987	1	0	1	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0085	3987	1	0	0	1	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0086	3987	1	1	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0087	3987	1	1	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0088	3987	1	1	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0089	3988	1	1	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0090	3986	1	0	1	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0091	3986	1	1	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0092	3986	1	0	0	1	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0093	3987	1	0	0	0	0	1	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0094	3986	1	0	1	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0095	3986	1	1	0	0	0	0	copy fasta	GNG7	chr19	2506219	2707694
GNG7_chr19_2506219_2707694	0/0	t0096	3986	1	0	0	0	0	1	copy fasta	GNG7	chr19	2506219	2707694
GNG8_chr19_46628953_46641202	0/1	t0001	223	383	81	67	182	13	39	copy fasta	GNG8	chr19	46628953	46641202
GNG8_chr19_46628953_46641202	0/0	t0002	223	28	17	8	0	0	3	copy fasta	GNG8	chr19	46628953	46641202
GNG8_chr19_46628953_46641202	1/0	t0003	223	26	0	7	17	1	0	copy fasta	GNG8	chr19	46628953	46641202
GNG8_chr19_46628953_46641202	0/0	t0004	223	1	0	0	1	0	0	copy fasta	GNG8	chr19	46628953	46641202
GNGT1_chr7_93901567_93916265	0/1	t0001	437	265	45	44	132	13	30	copy fasta	GNGT1	chr7	93901567	93916265
GNGT1_chr7_93901567_93916265	1/0	t0002	437	158	47	34	53	5	18	copy fasta	GNGT1	chr7	93901567	93916265
GNGT1_chr7_93901567_93916265	0/0	t0003	437	3	1	2	0	0	0	copy fasta	GNGT1	chr7	93901567	93916265
GNGT1_chr7_93901567_93916265	0/0	t0004	437	2	0	0	2	0	0	copy fasta	GNGT1	chr7	93901567	93916265
GNGT1_chr7_93901567_93916265	0/0	t0005	437	1	0	0	1	0	0	copy fasta	GNGT1	chr7	93901567	93916265
GNGT1_chr7_93901567_93916265	0/0	t0006	437	1	1	0	0	0	0	copy fasta	GNGT1	chr7	93901567	93916265
GNGT2_chr17_49201237_49215574	1/1	t0001	784	370	81	65	167	14	41	copy fasta	GNGT2	chr17	49201237	49215574
GNGT2_chr17_49201237_49215574	0/0	t0002	784	54	0	11	31	4	8	copy fasta	GNGT2	chr17	49201237	49215574
GNGT2_chr17_49201237_49215574	0/0	t0003	772	6	6	0	0	0	0	copy fasta	GNGT2	chr17	49201237	49215574
GNGT2_chr17_49201237_49215574	0/0	t0004	784	3	3	0	0	0	0	copy fasta	GNGT2	chr17	49201237	49215574
GNGT2_chr17_49201237_49215574	0/0	t0005	784	2	0	1	0	0	1	copy fasta	GNGT2	chr17	49201237	49215574
GNGT2_chr17_49201237_49215574	0/0	t0006	784	1	1	0	0	0	0	copy fasta	GNGT2	chr17	49201237	49215574
GNGT2_chr17_49201237_49215574	0/0	t0007	784	1	0	1	0	0	0	copy fasta	GNGT2	chr17	49201237	49215574
GNGT2_chr17_49201237_49215574	0/0	t0008	784	1	1	0	0	0	0	copy fasta	GNGT2	chr17	49201237	49215574
GNGT2_chr17_49201237_49215574	0/0	t0009	784	1	1	0	0	0	0	copy fasta	GNGT2	chr17	49201237	49215574
GNGT2_chr17_49201237_49215574	0/0	t0010	784	1	1	0	0	0	0	copy fasta	GNGT2	chr17	49201237	49215574
GNL1_chr6_30536381_30561489	0/0	t0001	4978	182	54	23	82	5	18	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0002	4978	94	14	26	46	3	5	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/1	t0003	4978	41	0	13	11	3	13	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0004	4978	20	2	2	16	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0005	4978	12	1	0	11	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0006	4979	6	4	2	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0007	4974	4	1	1	2	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0008	4978	4	0	3	0	1	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0009	4978	3	0	0	3	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0010	4978	3	2	1	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0011	4978	3	0	0	3	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0012	4978	2	0	0	0	0	2	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0013	4978	2	0	0	2	0	0	copy fasta	GNL1	chr6	30536381	30561489