Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALPI_chr2_232451153_232465753	0/0	t0012	1655	2	0	2	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0013	1655	2	0	0	2	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0014	1655	1	1	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0015	1655	1	1	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0016	1655	1	0	0	1	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0017	1655	1	0	0	1	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0018	1655	1	0	0	0	0	1	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0019	1655	1	0	0	0	0	1	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	t0020	1655	1	0	0	1	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPK1_chr4_112292369_112447621	0/0	t0001	1665	79	32	11	22	2	12	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	1/0	t0002	1665	73	14	18	30	1	9	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0003	1665	55	8	9	30	1	7	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0004	1665	39	4	8	22	4	1	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0005	1665	17	4	9	0	2	2	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0006	1665	6	0	0	6	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0007	1665	6	6	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0008	1665	5	4	1	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0009	1665	4	0	3	0	0	1	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0010	1665	4	0	0	4	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0011	1665	4	2	2	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0012	1665	3	3	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0013	1665	2	0	2	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0014	1665	2	0	0	2	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0015	1665	2	2	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/1	t0016	1665	1	0	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0017	1665	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0018	1665	1	0	1	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0019	1665	1	0	0	1	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	t0020	1665	1	0	0	1	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK2_chr18_58476247_58634091	0/0	t0001	925	101	15	7	64	1	14	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0002	925	46	3	17	21	2	3	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0003	925	38	9	11	10	4	4	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0004	925	30	9	5	12	2	2	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/1	t0005	925	17	8	3	2	1	2	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0006	925	16	3	4	8	1	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0007	925	13	0	5	6	0	2	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0008	925	11	9	1	0	0	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	1/0	t0009	925	8	0	3	0	1	3	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0010	925	8	8	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0011	925	6	6	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0012	925	5	4	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0013	925	4	3	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0014	925	4	4	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0015	925	2	0	1	1	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0016	925	2	0	0	2	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0017	925	1	0	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0018	925	1	0	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0019	925	1	0	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0020	925	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0021	925	1	0	0	0	0	1	copy fasta	ALPK2	chr18	58476247	58634091